Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi408g00030 ATGGGTGCTTGCTGGAGCAGCAGGGTTAAGGCCGTGAGTCCTTCCAGTACAAGGTTCACTTCTAGAAGCGAGAGCAGAGATGGCTATGACATCAGTTCAAATAGCAAGAGCTCATCAGCCTCCATATCCATGATTCATCGGAGTGAGGGTGAGATCTTACAATCTTCCAATTTGAAAAGCTTTAGCTACAATGAGCTAAGAACAGCCACGAGAAATTTCGCACCAGACAGTGTCTTAGGAGAGGGTGGATTTGGTTCAGTTTATAAGGGCTGGATTGATGAGTATTCACTTGCTGCTACCAAGCCAGGGATGGGCATGATTGTTGCTGTGAAGAGACTTAACCAAGATGGATCCCAGGGTCACAAGGAATGGTTGGCTGAAATACACTATCTTGGGCAACTGCAGCATCCTAATCTTGTCAAGTTGATAGGCTACTGCTTAGAGAATGAGAATCGACTTCTAGTTTATGAATTTATGCCTAAGGGCAGTGTGGAGAATCATCTGTTCAGGAGTCAGTACCTTCTACTTTATGAGTATCTCATTTTCAACCACTCTCTTGGACTTTAA 567 0.4427 MGACWSSRVKAVSPSSTRFTSRSESRDGYDISSNSKSSSASISMIHRSEGEILQSSNLKSFSYNELRTATRNFAPDSVLGEGGFGSVYKGWIDEYSLAATKPGMGMIVAVKRLNQDGSQGHKEWLAEIHYLGQLQHPNLVKLIGYCLENENRLLVYEFMPKGSVENHLFRSQYLLLYEYLIFNHSLGL 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi408g00030 188 SUPERFAMILY Protein kinase-like (PK-like) 51 175 IPR011009 -
Sebi408g00030 188 FunFam Serine/threonine-protein kinase BIK1 38 158 - -
Sebi408g00030 188 Gene3D Phosphorylase Kinase; domain 1 47 158 - -
Sebi408g00030 188 ProSitePatterns Protein kinases ATP-binding region signature. 79 111 IPR017441 GO:0005524
Sebi408g00030 188 ProSiteProfiles Protein kinase domain profile. 73 188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi408g00030 188 Pfam Protein tyrosine and serine/threonine kinase 77 171 IPR001245 GO:0004672|GO:0006468
Sebi408g00030 188 PANTHER OS01G0588500 PROTEIN-RELATED 35 174 - -
Sebi408g00030 188 MobiDBLite consensus disorder prediction 16 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi408g00030 Sebi-Chr408 527693 529394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi408g00030 49 169 Glycoside Hydrolase AT3G07070 46.281 9.64e-32 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Sebi408g00030 PK_Tyr_Ser-Thr 1e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi408g00030 - - gmx:100793817 277.33