Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi408g00019 ATGTTTTTGGAGCATGAAATCGGTGAATTCTCCACCACGAAATTGAAATGGAAATCGTCACCGGATCCGTTCATCTTTGGGAGCTTCAAATCAGTTAATCCTTTGGAGGAGGAGAAAGTTTCTCCGGCTTCACTCTCCGGCGAGACATCGTTTTGTTTGTCCAGCAACTCGATCGAGATCTCCGCTAGCAAAGGCAGCATTGCGGGTACGAGGATGGATGATGTCGTCGGTTTGCCGCACCTGCACAGTCGCGGGGAAGTGATACTGAAGATGTTCTCTCTCGCTTGTGGTGATTTCTCCTTTTTCTCTCTCGGTGGTTCCCTTCATGGCCTTGTCAGATCTAGCACGAATGTTTGGAGTCATCCAGCCAGGATTTTAGAGCAAGACGTTGTGATTGTCATCAACAACATGGAGAATTCCGTTAATGTCCCTCTTGTTCTTAAATACTTTCAGCAAAAGATTAAACCCAGCAGGGAGGTGATTCCTTACAATGTCACTCTTAAGGTATTTAGAAAATGTAAGGATTTGGGTGGAGCGGAGAAGGTGTTTGATGAAATGCTTGAGAGAGGGGTGGAGCCTGATAATGTTACTTTTTCAACTATAATTAGTTGTTCTAGGGTGTGTTATTTGCCCAATAAGGCCGTGGAGTGGTTTGAAACGGATGATTTGGCATTAGGAAAACAAGCCCACAATTACATTTGTGATAATAATATTACAGTGAGTGTGACACTTTGTAACTCTCTAACAGATATGTATGCAAAATGTGGGGCTCTTCAGACTACTGCTTCAAAGAATGTTGAAGAAGTGGATGGAAAAGTGGGGTCTGGTGCATTGTTTGTGAAGGTCAATATGGATGGTGCTCCTTATTTGAGAAAAGTAGACTTGAAGAATTACTCTGCATATGCAGAATTATCTTCTGCTCTGGAGAAGTTGTTTAGCTATTTCACCAAAGGTCAACGTGGATCTCTTGGAAATCTGGGCAAGGAGATGCTGAATGAAAACAAGCTGAAGGATCCGCTTCATGGGTCAGAATATGTTCTTACATATGAGGATAAAGATGGTGACTGGATGCTGGTGGGTGATGTCCCTTGGGAGATGTTTATTGATAAATGCAGAGGCCTTTGGATTCTCCTCAATGTCTTTGTAGGCGATCAACTTTTGGCTTGGGGTATCCCACCACTAAAACTTTTCTCAGAATTTTTATCAAAGATGCAAAGAAAGACTTCCAGCATTGGTGGCTGCAGCACTAATGCTAATGGCATACCTACATACCGTGAAGTTGCTCTTATGATGCTAATGGCATACCTTTCCTACATGATGGCTGAATTAATCTCTCTGAGTGGAATTCTCACTGTATTCTTTTGTGGGATTGTCATGTCTCATTATACTTGGCATAATGTGACTGAGAATTCAATAATCACTACCAAGCATGCTTTTGCAACCTTGTCACTTAATGCTGAGATCTTTACCGTCCTTTATGTGGCCCTTGCTTGTGATGTTGATGATGTACATGTTGGAAATAAGCTAGCAGTATAG 1536 0.4225 MFLEHEIGEFSTTKLKWKSSPDPFIFGSFKSVNPLEEEKVSPASLSGETSFCLSSNSIEISASKGSIAGTRMDDVVGLPHLHSRGEVILKMFSLACGDFSFFSLGGSLHGLVRSSTNVWSHPARILEQDVVIVINNMENSVNVPLVLKYFQQKIKPSREVIPYNVTLKVFRKCKDLGGAEKVFDEMLERGVEPDNVTFSTIISCSRVCYLPNKAVEWFETDDLALGKQAHNYICDNNITVSVTLCNSLTDMYAKCGALQTTASKNVEEVDGKVGSGALFVKVNMDGAPYLRKVDLKNYSAYAELSSALEKLFSYFTKGQRGSLGNLGKEMLNENKLKDPLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDKCRGLWILLNVFVGDQLLAWGIPPLKLFSEFLSKMQRKTSSIGGCSTNANGIPTYREVALMMLMAYLSYMMAELISLSGILTVFFCGIVMSHYTWHNVTENSIITTKHAFATLSLNAEIFTVLYVALACDVDDVHVGNKLAV 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi408g00019 511 ProSiteProfiles PB1 domain profile. 277 385 IPR000270 GO:0005515
Sebi408g00019 511 Pfam AUX/IAA family 263 377 IPR033389 -
Sebi408g00019 511 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 268 377 IPR003311 GO:0005634|GO:0006355
Sebi408g00019 511 NCBIfam pentatricopeptide repeat 163 194 IPR002885 -
Sebi408g00019 511 SUPERFAMILY CAD & PB1 domains 275 374 - -
Sebi408g00019 511 Gene3D Tetratricopeptide repeat domain 113 272 IPR011990 GO:0005515
Sebi408g00019 511 FunFam Auxin-responsive protein 272 380 - -
Sebi408g00019 511 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 193 IPR002885 -
Sebi408g00019 511 Pfam PPR repeat family 160 203 IPR002885 -
Sebi408g00019 511 Pfam Sodium/hydrogen exchanger family 426 490 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Sebi408g00019 511 Gene3D - 273 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi408g00019 Sebi-Chr408 290513 292140 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi408g00019 423 501 Antiporters AT3G05030 78.750 2.08e-31 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Sebi408g00019 AUX_IAA 4.6e-50 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi408g00019 K14484 - gmx:100815447 193.741