Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi408g00004 ATGTCTTCCACTGCTGGCAAGGTAATTCCTTGCAAAGCTGCAGTTGCATGGGAAGCAGGGAAGCCATTGGTGATTGAGAATGTTGAGGTTGCTCCACCACAGGAGAATGAAGTTAGGATCAAAGTCAAATATTCCTCACTTTGCCATACTGATCTCCATTTCTGGGAATCCAAGGGTTTGCCACCAATGTTTCCACGCATATTTGGCCATGAAGCATCTGGTGTTGTGGAGAGTGTAGGTGATGGGGTATTAGACCTCAAGGCAGGGGATCATGTGCTTCCAGTATTCACAGGGGAGTGTGGGGAATGCCCACATTGCAAATCTGAGGAGAGCAATATGTGTGATTTGTTGAGAATAAATCCAGCAAGAGAAGTCATGATCAGTGACGGAAATTCTAGGTTCTCTATTAATGGCAAACCCATAAGCCGCTTTCTTGGCACATCTACTTTTAGCCAATACACTGTTGTTCATTCAGGTTGTGTTGTAAAGATCAATCCAAAAGCTCCTCTTGACAAAGTTTGCATCCTCAGTTGTGGCATCACAACAGGATTAGGAGCAGTTCTGAATGTTGCAAAGCCAAAAAAAGGTGCTTCCATAGCAGTATTTGGGCTTGGAACTGTTGGGCTAGCTGCTGTAGAAGGTGCAAGAATTGCTGGGGCATCCAAGATTATTGGGGTTGATTTGAATCCTAACAGATTTAAGGAAGCCAAGAAATTTGGATTAACTGATTTTATAAATCCGAAAGAACATAAAAAGCCAGTTCATGAGGTCCTGAAGGATATGACAAATGGAGGAGTAGATAGGAGTATAGAGTGCACTGGAAACATCAACGCCTTGATGTCTGCTTTAGATGCTGCACATGATGGATGGGGTCGTGCTGTCCTTGTTGGAGTACCTAGTATTGATGCAGTTTTCAAGACAAGTCCCTACAATTTCCTTGATGGAAAGACAATTACAGGTACTACCTTTGGGAACTACAAGCCTAAAACAGGCCTTCCATCAATGGTTGATTTGTTCATGAACAATACATTGGAGTTGGATAAGTTTATAACTCATAGAGTTCCTCTCTCAGAAATCAATAAGGCCTTTGACTACATGATTAAGGGGCAGAGTTTAAGGACAATCATAGATATGGAAAACTAG 1143 0.4234 MSSTAGKVIPCKAAVAWEAGKPLVIENVEVAPPQENEVRIKVKYSSLCHTDLHFWESKGLPPMFPRIFGHEASGVVESVGDGVLDLKAGDHVLPVFTGECGECPHCKSEESNMCDLLRINPAREVMISDGNSRFSINGKPISRFLGTSTFSQYTVVHSGCVVKINPKAPLDKVCILSCGITTGLGAVLNVAKPKKGASIAVFGLGTVGLAAVEGARIAGASKIIGVDLNPNRFKEAKKFGLTDFINPKEHKKPVHEVLKDMTNGGVDRSIECTGNINALMSALDAAHDGWGRAVLVGVPSIDAVFKTSPYNFLDGKTITGTTFGNYKPKTGLPSMVDLFMNNTLELDKFITHRVPLSEINKAFDYMIKGQSLRTIIDMEN 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi408g00004 380 CDD alcohol_DH_plants 9 377 - -
Sebi408g00004 380 Gene3D - 19 370 - -
Sebi408g00004 380 SUPERFAMILY GroES-like 329 376 IPR011032 -
Sebi408g00004 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Sebi408g00004 380 Gene3D - 183 321 - -
Sebi408g00004 380 PANTHER ALCOHOL DEHYDROGENASE 6 376 - -
Sebi408g00004 380 FunFam Alcohol dehydrogenase class-P 183 321 - -
Sebi408g00004 380 Pfam Zinc-binding dehydrogenase 207 326 IPR013149 -
Sebi408g00004 380 FunFam Alcohol dehydrogenase 6 14 198 - -
Sebi408g00004 380 Pfam Alcohol dehydrogenase GroES-like domain 36 163 IPR013154 -
Sebi408g00004 380 SUPERFAMILY GroES-like 4 187 IPR011032 -
Sebi408g00004 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 341 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi408g00004 Sebi-Chr408 42050 44439 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi408g00004 36 380 Monolignol Biosynthesis Gene Families AT1G72680 24.857 8.03e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi408g00004 K18857 - nnu:104602143 621.313