Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi407g00034 ATGGTGAGAACCCCTTCTTCTGACAAAAATGGACTAAAGAAAGGAACCTGGAGTCCAGAAGAGGATAGGAAGTTAATGGCTTATGTCACTAAGTATGGCTGCTGGAATTGGAGCCAAATCCCAAGATTTGCGGGTCTGGCAAGGTGTGGAAAGAGTTGCAGACTTAGGTGGCTGAATTATCTCAGGCCCAACATAAAAAGAGGGAACTACACTCGAGAAGAAGAAGACACTATTATCAGACTGCACAATAAGTTGGGTAACAGATGGTCTGTCATTGCTACTCATTTACCAGGAAGAACAGATAACCAAATAAAGAACCACTGGCACACCACTCTTAAGAGGCGTTTTGGAAAGAACTCAGTGACAAATGAGATTAATGTTGAAGCCATAACAACTAAATCAAATGATTCTGGGACCAAGCAAGACAGGGACTTGGTTCAGAACAATGGTAATTCCTTCCACATTGGTTCAATGAGCACTTCCAACGCCTCTGATAGTAGCACTTTGTCCCCACAATTTTCCATGACCGAATTCTCCTCCATACCCTCAGATTATACCTCAGCTGCCACTAATAAAAATGTGTTAATGGATAATGACTTTGATTTTCTTGATGCATGCACGGAGGCTATGAACGAGAATTTCTGGACAGAGACATATCTACCTGACATTTGCTACACCCCAATTAAGATAGTGTCAGATATTGCTATTAATGGTAGTACAAATCAAG 727 0.414 MVRTPSSDKNGLKKGTWSPEEDRKLMAYVTKYGCWNWSQIPRFAGLARCGKSCRLRWLNYLRPNIKRGNYTREEEDTIIRLHNKLGNRWSVIATHLPGRTDNQIKNHWHTTLKRRFGKNSVTNEINVEAITTKSNDSGTKQDRDLVQNNGNSFHIGSMSTSNASDSSTLSPQFSMTEFSSIPSDYTSAATNKNVLMDNDFDFLDACTEAMNENFWTETYLPDICYTPIKIVSDIAINGSTNQ 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi407g00034 242 CDD SANT 69 112 IPR001005 -
Sebi407g00034 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Sebi407g00034 242 SMART sant 66 114 IPR001005 -
Sebi407g00034 242 SMART sant 13 63 IPR001005 -
Sebi407g00034 242 CDD SANT 16 61 IPR001005 -
Sebi407g00034 242 Gene3D - 13 66 - -
Sebi407g00034 242 MobiDBLite consensus disorder prediction 132 169 - -
Sebi407g00034 242 Gene3D - 68 145 - -
Sebi407g00034 242 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Sebi407g00034 242 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 185 - -
Sebi407g00034 242 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Sebi407g00034 242 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Sebi407g00034 242 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Sebi407g00034 242 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Sebi407g00034 242 FunFam Transcription factor RAX3 7 67 - -
Sebi407g00034 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi407g00034 Sebi-Chr407 945698 949586 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi407g00034 1 165 MYB Transcription Factor Family AT2G31180 51.479 3.98e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi407g00034 Myb_DNA-binding 8.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi407g00034 K09422 - gmx:100811124 296.589