Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi407g00017 ATGGTTAATGATGATCAAAGGGACAACAATCATCAAGTAAAAATGAGGACTGGTGTTCTGTTCTCCCTGCTCTGTTGGCTGCTATGTTCCCAACTATGTTCAGCTGGAGATACATTGAAATCTGGCAAGAATATAACACAGTACTCGGAAAACCTTGTCTCAGCTGGAAACAAATTTGAACTGGGCTTCTTTTCTTTACCTATTGGAAGTGATAGCACGAGTGCAAAAAAGTATTTGGGGATATGGTATCACAACTTGGAACCACAAACAGTGGTATGGGTTGCCAACAGAGACAGGCCAGTTGAAGGTTCCAGTGGAGTTTTTCAAATTGCAGAGGATGGAAATGTCGTAGTAGCAGATGCATCGCAAAACTACTGGTCCTCTGGACTTGAAGAGTCCTCATCCAGAAACAGGACAGTGAAGCTCTTGGATTCTGGGAATCTAGTGCTAATGGATGATGATCACTCTGGAATGAGTTATCTGTGGCAGAGCTTCCTTCATCCAACAGACACGTTTCTTCCTGGCATGAAAATGGATGCAAATGCGACATTGACTTCTTGGAAAAACGACAATGACCCGGGAACTGGGAGCTTCACCTTTAGGCTGGCTCGAAAAAGGTGGCAATACAGAGTATATAACAACTCACAACTTTACTTGGAATTGGATGGAATCAATTCAGAAGCGATGTCCCCGTTGGTGATTGGCTTGTTGGCCAACACCACCTTAAATACGTCAATATCTTACAAATCTTCAGGCAAAAGGATCAACTTTCAATCGCAACCTTATAATTATGAGAAATCAAGGCTGTTAATGAATTCCACAGGGGAGATACAGTTTTTGAAATGGGCAGATATACAATGGGATATGCTGTGGCGGATGCCAGAGGATGAATGTAACATACATAACTATTGCGGGAATTTTAGCAGCTGCAACAAAAATAATGATTGGAGACGCTGCAAATGTTTACCAGGCTTCAGTCCTAGGGTGATTAATAATCCGCGCCAAGGGTGTTTGAGAAAATCTAGGCCGTGTAGCTACAATGACAAGATGTTCCTCAACTTAACCAAGATTAAAGCGGGTAGCCCAGACCTAACAATCACAAAACAAACTGAAGAAGACTGCAAATCTTTATGCCTTAACTTCTGTTCCACATCCGAGTGCCAGGCTTATTCGTATTATTATTCGTCTGTGTTTGACCGTACTTTAGAAGCGGGTACATGCGAGATCTGGGCACGGGATTTACCTACACTTCAAGAGCAGCAAGATAGTGGTCGTGATGTTTCTATCTTAGTTAAAACTTCAGATATAGTGTCAACTGCAAAATCGTGTAAACCTTGTGGCACATACATAATTCCTTATCCGCTAAGCACTGGCCTAAACTGTGGAGACCACATGTACAACAAGTTCAGTTGCTCGGAAGGGGAGGTTATGTTCAACATGTCCGGAGGGAAATTATACAGAGTTACTTGGATTGATGAAGCTGCCAGAAGATTTTTCATCCAAACGAATGATTCAGCTTCAGATCGCTGCGATTCCAGTTCCAGCTATCAAAATGATGAGGCTAGTCCTCCATTTAATGTGATTAACTGGTGCTTCAGAGAAGATGAAATAGAGGTCCATTGGCTACCAGCACCAGAACCGCTCTGTAATAAGTCTGTAGACTGCAAGAATTGGCCTCATTCAACATGCAATGCAACAAGTGGAGGAGAAAGCAGGTGCTTTTGCAATTCAAATTATCAGTGGAATGCCTCGAGTTTAAGATGTACCCGAGATAGGGAAAGCATTCAAACTCAGGAGGGCTTTTATGGTAGTGGAAGACATGTGAAAAGTTTGATTGACTTAGGAATTTTAGAAGATAAAGACAGTGAAGGCATTGAAGTACCATATTATACTTTTGGAAGCATTCTAGCAGCTACAGATAATTTCTCAAATTCAAACAAGCTTGGACAAGGAGGTTATGGGCCTGTATATAAGGGAACGTTTCCTGGAGGACAGGAAATGGCTATAAAGAGGCTTTCAAGTGTTTCAACTCAAGGCCTACAGGAATTCAAAAATGAGGTTGTTTCAATTGCCAAACTTCAACATCGGAACCTTGTTAGACTTAGGGGCTATTGCATCAAAGGAGATGAAAAAATCTTACTGTATGAATACATGCCAAACAAGAGCTTGGACTCATTTATATTTGGCATTGCGCGAGGGTTACTCTATCTTCACCAAGACTCCAGATTGAGAGTGATTCATAGAGACTTAAAAACCAGCAACATTCTTCTGGATGGGGAGATGATTCCAAAGATATCAGACTTTGGCCTTGCCAAAATATTTGGGGGAAAAGAGACCGAAGCCAGCACAGAGAGAGTAGTGGGAACCTATGGATATATGGCTCCAGAGTATGCCTTGGACGGAATGTTTTCAATGAAATCTGATGTTTTCAGCTTTGGTGTAGTCCTACTAGAGATACTTAGTGGGAAAAGGAACACAGGATTCTATCAATCTAATCAAATTTCAAGCCTTTTGGGTTATGCATGGAGATTATGGACAGAGAATAAGTTGTTCGATTTAATGGACCCTTCTCTGGGTGAATCTTGCAATGAAAATCAATTCATTAGGTGTCAACTTATTGGGCTCTTGTGCGTACAAGATGAACCGGGTGATCGGCCCACTATGTCAAATGTTGTGACAATGCTTGATAGCGACACTGCAACCATCCCAATTCCAACACAACCAACGTTTTATTCGATCAAGCACCGATCTAGCACAACTTCTTCTAGCAAACCAGAAGTTAGTGTAGAATTTGAGAGCAGTTATCAAGAAGGTCGATAG 2820 0.4167 MVNDDQRDNNHQVKMRTGVLFSLLCWLLCSQLCSAGDTLKSGKNITQYSENLVSAGNKFELGFFSLPIGSDSTSAKKYLGIWYHNLEPQTVVWVANRDRPVEGSSGVFQIAEDGNVVVADASQNYWSSGLEESSSRNRTVKLLDSGNLVLMDDDHSGMSYLWQSFLHPTDTFLPGMKMDANATLTSWKNDNDPGTGSFTFRLARKRWQYRVYNNSQLYLELDGINSEAMSPLVIGLLANTTLNTSISYKSSGKRINFQSQPYNYEKSRLLMNSTGEIQFLKWADIQWDMLWRMPEDECNIHNYCGNFSSCNKNNDWRRCKCLPGFSPRVINNPRQGCLRKSRPCSYNDKMFLNLTKIKAGSPDLTITKQTEEDCKSLCLNFCSTSECQAYSYYYSSVFDRTLEAGTCEIWARDLPTLQEQQDSGRDVSILVKTSDIVSTAKSCKPCGTYIIPYPLSTGLNCGDHMYNKFSCSEGEVMFNMSGGKLYRVTWIDEAARRFFIQTNDSASDRCDSSSSYQNDEASPPFNVINWCFREDEIEVHWLPAPEPLCNKSVDCKNWPHSTCNATSGGESRCFCNSNYQWNASSLRCTRDRESIQTQEGFYGSGRHVKSLIDLGILEDKDSEGIEVPYYTFGSILAATDNFSNSNKLGQGGYGPVYKGTFPGGQEMAIKRLSSVSTQGLQEFKNEVVSIAKLQHRNLVRLRGYCIKGDEKILLYEYMPNKSLDSFIFGIARGLLYLHQDSRLRVIHRDLKTSNILLDGEMIPKISDFGLAKIFGGKETEASTERVVGTYGYMAPEYALDGMFSMKSDVFSFGVVLLEILSGKRNTGFYQSNQISSLLGYAWRLWTENKLFDLMDPSLGESCNENQFIRCQLIGLLCVQDEPGDRPTMSNVVTMLDSDTATIPIPTQPTFYSIKHRSSTTSSSKPEVSVEFESSYQEGR 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi407g00017 939 ProSiteProfiles PAN/Apple domain profile. 344 434 IPR003609 -
Sebi407g00017 939 Gene3D Phosphorylase Kinase; domain 1 617 715 - -
Sebi407g00017 939 Gene3D Transferase(Phosphotransferase) domain 1 716 903 - -
Sebi407g00017 939 Pfam S-locus glycoprotein domain 262 328 IPR000858 GO:0048544
Sebi407g00017 939 CDD B_lectin 52 168 IPR001480 -
Sebi407g00017 939 Pfam D-mannose binding lectin 90 186 IPR001480 -
Sebi407g00017 939 ProSiteProfiles Bulb-type lectin domain profile. 30 163 IPR001480 -
Sebi407g00017 939 CDD EGF 297 326 - -
Sebi407g00017 939 ProSiteProfiles EGF-like domain profile. 294 331 IPR000742 -
Sebi407g00017 939 SMART serkin_6 642 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi407g00017 939 Gene3D - 30 166 IPR036426 -
Sebi407g00017 939 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 127 917 - -
Sebi407g00017 939 ProSitePatterns Serine/Threonine protein kinases active-site signature. 745 757 IPR008271 GO:0004672|GO:0006468
Sebi407g00017 939 Pfam Protein kinase domain 643 833 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi407g00017 939 SMART ntp_6 346 433 IPR003609 -
Sebi407g00017 939 FunFam Receptor-like serine/threonine-protein kinase SD1-8 31 165 - -
Sebi407g00017 939 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 714 903 - -
Sebi407g00017 939 SUPERFAMILY alpha-D-mannose-specific plant lectins 91 193 IPR036426 -
Sebi407g00017 939 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 607 717 - -
Sebi407g00017 939 SMART blect_4 43 168 IPR001480 -
Sebi407g00017 939 ProSiteProfiles Protein kinase domain profile. 642 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi407g00017 939 MobiDBLite consensus disorder prediction 915 939 - -
Sebi407g00017 939 PIRSF SRK 10 459 IPR024171 GO:0004674
Sebi407g00017 939 PIRSF SRK 609 938 IPR024171 GO:0004674
Sebi407g00017 939 SUPERFAMILY Protein kinase-like (PK-like) 624 927 IPR011009 -
Sebi407g00017 939 Pfam PAN-like domain 344 414 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi407g00017 Sebi-Chr407 449632 454079 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi407g00017 618 910 Receptor kinase-like Gene Family AT4G23230 55.305 4.73e-115 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi407g00017 Pkinase 2.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi407g00017 - - vvo:131653723 1189.1