Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi407g00006 ATGAATATGTCTCTGGTTCCGGCACATTTCCATTCCATTAGAAGTATTTGCGAATGTCGTGAAAGTTGGAGGTTGAGGGTCAAAGTGGTTAGACTATGGAATATGGCTTCGGTTGTTAAACCACATGATCCATTTGCCACACAGATGTTGGGGAGGATCGAAGCTACGGTGCCTAAACAACACATGGCCAAGTTTATGCACTTTGTTATTGAAGGAGAGGTGTATAGGGTGACGAACTTTGGGTTGAAGCGCAACTCAGGACATTTCAGAGCAAGTGCTCATGAGTTTATTGTGGTGTTCAATGCGAATACAAAAGTCATTCCTTGCCATAGAGTTGGAATACCATTGTCTGGCTTGTCCCTGTGCAATTTCGGAGGAAATTATGCTGAACAAGGAAGGGAGACAAACACGTCTCATGCTGTTGGATTTAGTGGATTAGATGGGGACATACGCTTAGCTGTGTTTGGAGAAATGATTGATGTTGTTGCGGGATTCCTATCCCTCCCTCGAATAGGACTTCCTGTACTTATAGTTCATTTGGCAAAGGTTAATCTCTACAAAGGTGAAGTGGGCATTCAAAATGTGATGAATGCAACAAAGTTCTTCTGGAATCCCGACTTACCTGAGGCTATTGACTTAAAAAATGGATTAGCCGTGCACGAGATCGAAACAGAACTTGATATTGGAAAGATATGTCAAAGAAACAGGCCTGTTTCACTTAAGGAAGAATTCCTCCAGCTCTATCCGAAGAAGACCCTATGTCAGTTAGTAGAAGCAACTGAGGATAGCTTTTGTATTGTATTGTGCACTGTGGATCAAGTTTTGCATGAAGGCTTTTGGTGGTATATGGCATGTAAATGCATGAAGGTTGTGTCATATGATGATGGAGTGCCTTATTGTGGGGACTGTCAGAGCTATGTCTATGAACTGACTCTTAGGTACAAACTCAAGTTGGAGGTTGGAGATGGAACAGATAGTGTGCAATTGATTCTGTTTGATTCTGAGTGCTACACTATCCTTAATAAGTCATGCCGTGACATGTTGTCCGAGCAAAAGGTTTCATTAGCTGAATACCCGTGTGAGATGAATAACGTTGTTGGGAAGGAGCTCCTCTTCCGAGTTGAGCAACAGGAAGATACATCATTCAGCTATGATCAATCCTTTAGAGTGAGGAGAATTTGTTCAGACCTTGATATCATTGCTCAGTATAAGGCTGAAATTGAATGTGAGACTCCACTCGAGATGAAGTTTAGCCCTTCATTCAGCAAGATAGGGGCTGGAAACGAAGTCAGCCCAATTGCTTGTATGCAAAAGCCACCTATTGTGGATGATAGTGGAAGTGCTTGCAAGAGGGATAACGAGGAAGCAACTGATGGAGTTTCTGTTCGCAAAAAACGTGGGAAAGGGCAACAAATGAAACTTGAGAGAAGTTGA 1434 0.4247 MNMSLVPAHFHSIRSICECRESWRLRVKVVRLWNMASVVKPHDPFATQMLGRIEATVPKQHMAKFMHFVIEGEVYRVTNFGLKRNSGHFRASAHEFIVVFNANTKVIPCHRVGIPLSGLSLCNFGGNYAEQGRETNTSHAVGFSGLDGDIRLAVFGEMIDVVAGFLSLPRIGLPVLIVHLAKVNLYKGEVGIQNVMNATKFFWNPDLPEAIDLKNGLAVHEIETELDIGKICQRNRPVSLKEEFLQLYPKKTLCQLVEATEDSFCIVLCTVDQVLHEGFWWYMACKCMKVVSYDDGVPYCGDCQSYVYELTLRYKLKLEVGDGTDSVQLILFDSECYTILNKSCRDMLSEQKVSLAEYPCEMNNVVGKELLFRVEQQEDTSFSYDQSFRVRRICSDLDIIAQYKAEIECETPLEMKFSPSFSKIGAGNEVSPIACMQKPPIVDDSGSACKRDNEEATDGVSVRKKRGKGQQMKLERS 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi407g00006 477 CDD RPA1_DBD_C 250 393 IPR047192 -
Sebi407g00006 477 Pfam Replication factor-A C terminal domain 265 392 IPR013955 -
Sebi407g00006 477 SUPERFAMILY Nucleic acid-binding proteins 8 110 IPR012340 -
Sebi407g00006 477 Gene3D - 140 224 IPR012340 -
Sebi407g00006 477 MobiDBLite consensus disorder prediction 445 465 - -
Sebi407g00006 477 CDD RPA1_DBD_A_like 24 106 - -
Sebi407g00006 477 SUPERFAMILY Nucleic acid-binding proteins 254 398 IPR012340 -
Sebi407g00006 477 Gene3D - 246 407 IPR012340 -
Sebi407g00006 477 Gene3D - 10 111 IPR012340 -
Sebi407g00006 477 MobiDBLite consensus disorder prediction 443 477 - -
Sebi407g00006 477 Pfam Domain of unknown function DUF223 52 112 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi407g00006 Sebi-Chr407 313796 316277 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi407g00006 6 347 Core DNA Replication Machinery Family AT5G45400 19.797 8.16e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi407g00006 - - lja:Lj6g3v0884310.1 284.263