Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi407g00004 ATGCATGTTACTACGTCCTCTCATAGCCCCATGAAAGCTGAGCTAAAGGGAACGTCCATTTCCTTTCAAAACCCTACACTTTTAACACACCCCATAATCCTCTTTCAGGAGCACTTAAAGGGTGTCTTGGAAGCCTTGATGGAGCTTGTATTGAGAAGCTTTTTACTCCACTGTGCAAGTGCTCTGGAGAGCAATGATGTCACCTTGGCTCAACAAGTCATGTGGGCACTAATCTCTAGAGCTTCAAGAATTTGCCCTGCTGCCATGAATTTCAAGGGAAGCAATACCATTCAGAGGAGGTTGATGACTGTGACAGAGCTAGCAGGGTATGTTGATTTAATCCCTTGGCATAGATTTGGATTTTGTGTATCCAATAATGAGATTTTTAAAGCAACTATGGGGTTCCAAAAGGTACATGTTCTAGATTTTAGCATAACCCCTTGTATGCAATGGCCTACTTTTATAGATGCATTAGCTAAAAGGCCTGAAGGACCTCCTTCACTTAGAATCACTGTGCCATCTTTTAGGCCACCAGTCCCTCCTTTAGTCAATATATCAATACATGAGGTTGGTCTACGTTTAGGTAATTTTGCCAAGTTCAGGGATGTCCCTTTTGAGTTCAATGTTATTGGAAACACAGCTCAATTAGCATCTTCAGAATTGAGCAATGAAACAACAAGCTTTCATTTTGAATCTCTGTTAAGTCTCTTGAATCCTACTATGCTAAACCTTAGGGAAGATGAAGCTTTGGTCATAAATTGCCAAAATTGGCTACGTTATTTGTCTGATGAAAGAAAGGGAAGTCACCAAAACCTTTCCCTTAGGGATGCTTTTCTGAGTCTAGTAAAAGGCCTTAACCCCCAGATTGTGCTTTTGGTTGATGAGGATTGTGATCTTAGTGCATCCAGTCTCACATCAAGAATTACCTCTTGTTTCATCAACCATCTATGGATACCCTTTGATGCATTGGACACTTTTTTGCCTAAGGATAGTTGTCAAAGGACAGAGTTTGAATCAGACATAGGACAGAAAATTGAGAACATCATAAGCTTTGAAGGGCATCAAAGGATAGAGAGATTGGAGTCCGGGATGCAAATGTCCCAAAGAATGAAAAATGTAGGTTACTTTAGTCTTCCATTTTGTGATGAAACTGTTAGAGAAGTTAAAGATTTGCTAGGTGAACATGCTAGTGGATGGGGGATGAAAAGGGAAGAAGGTATGTTAGTTCTCACATGGAAAGGAAACAGCTGTGTGTTTGTGACAGCTTGGGTCCCCAGTGAAATGAGGGATCATCATATTGCTATATTGCTTCAATGGTCCATTGAGAGAGAAGAGAGGAATTTCATCACTAATTGTGAAAGGGCAGCAATTGATCTGCAAAATGACAACAAGAGAAAAACGGCTGCATTTTGA 1413 0.4048 MHVTTSSHSPMKAELKGTSISFQNPTLLTHPIILFQEHLKGVLEALMELVLRSFLLHCASALESNDVTLAQQVMWALISRASRICPAAMNFKGSNTIQRRLMTVTELAGYVDLIPWHRFGFCVSNNEIFKATMGFQKVHVLDFSITPCMQWPTFIDALAKRPEGPPSLRITVPSFRPPVPPLVNISIHEVGLRLGNFAKFRDVPFEFNVIGNTAQLASSELSNETTSFHFESLLSLLNPTMLNLREDEALVINCQNWLRYLSDERKGSHQNLSLRDAFLSLVKGLNPQIVLLVDEDCDLSASSLTSRITSCFINHLWIPFDALDTFLPKDSCQRTEFESDIGQKIENIISFEGHQRIERLESGMQMSQRMKNVGYFSLPFCDETVREVKDLLGEHASGWGMKREEGMLVLTWKGNSCVFVTAWVPSEMRDHHIAILLQWSIEREERNFITNCERAAIDLQNDNKRKTAAF 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi407g00004 470 ProSiteProfiles GRAS family profile. 42 424 IPR005202 -
Sebi407g00004 470 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 50 419 IPR005202 -
Sebi407g00004 470 Pfam GRAS domain family 92 423 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi407g00004 Sebi-Chr407 134118 135678 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi407g00004 18 425 GRAS Transcription Factor Family AT3G49950 39.545 1.07e-90 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Sebi407g00004 GRAS 5.1e-68 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi407g00004 - - gmx:100805056 702.975