Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi406g00050 ATGGATGAGAACTTGGAAAATTGTGATGGTTTTGATGGTGGGCTCGAAGACATTGAACAAATGAATGATGAAGATGTGGTCATTGAGAATGCATTGAATAGAGTAAGCATTGATGGTGAAGATGACTTTCTGAAGATTGACCCGTCAATGTTAAATGAGGATAATGCGATGAGAATTCATTTTCCTGATGTAGAGGTTGCCTATAACTTTTATAATTGGTATGGGAGATTGAAAGGCTTTTCAGCGAGAAAAGGAAAGGTACGAAAAAACAAGAGTCGTGAACCTGTTGAGAAGATATTCCTTTGTCATAGAGAAGGCGAGAGGGAAAAAAAGAATAGTGAACAAAAAGAGGCACAGGTGCGAGAATCTAAGCCCCAGACAAGAACTGGGTGTCTTGCAAGGATGAAGGTACGTGTAGACAAGGAAACCGACAGATGGAATGTGACAGCGTTTTCAGATGTGCATAACCATAAGATGTTGGCAGGGAAATATAGTGGAATGTTACCAGCCCATAGGAGAATGACTGAAGCTGATGTTATGCAAATGAACAACCTCCGCATGGTTGGAATAAGCACCCCACACATTTATGGGACATTTGCAAGCCAATCGGGTGGTTATCAACATATTGGTTTCAATAAAAGAGACATTTATAATGAAATTGTGAAGCAACGACAAGTGCATACTTCTGATGTTAAGTCTGCTATTCAATACCTTCGTGCATTAGCAAAAGATGACAAAGCTATGTTATTCAGGCACACGGTTGATGGGGAAGGGAGACTTCAACGTTTGTTTTGGTGTGATGGGCATAGTCAAGTTGATTATAAAGTATTTGGGGATGTGTTAGCATTTGATGCCACCTACAAAAGGAACAAATATAACTTTCCATTGGTTATTTTTTCAGGCGTTAACCACCACAACCAAACAACTGTATTTGCTAGTGCTGTAATTGCAGATGAAACAGAGGACTCATATGTTTGGCTCCTAGAACAGTTGATGGTAGCTATGAAAGGCAAAGCTCCTCAGGCAGTTATTACAGACGGTGATGTTGCAATAAGGAATGCTATTAGAAGGGTTTTACCAAAGAGCCATCATAGACTTTGTGCATGGCACCTTTTACGTAATGCTACAAGCAATGTAAAAAATTCTAAGATGGTTACTCGGTTAAAGAAGTGTATGTTGGGTGATTATGAGATTTCTGAATTTCAGCGAAGGTGGGATCGTATGGTAACTGAGTGTGGACTACAAGATAATACATGGGTGAAAGAACTTTATGAAAGAAAGAGTATGTGGGCTACTGCATGGATCAAGGGTAGTTTTTTTGCTGGAGTAAGGACAACATCAAGGTGTGAAGGTCTTCATGCTCAGCCTGGAAAGTTTGTTCAGTCCCGTAATGGGTTTTTAGATTTCTTACAGAATTTCAATCATTGTATTGAGTCATTTCGTTACAAGGAAGTTGAAGCTGACTACGGCACGGTGGTGGGCGAACCAGAGTTGCAAACCAATTTGCATGCTTTAGAGAGGTCAGCCTCAAGGATGTTCACAAGGGAAGTGTTAAAGTTAGTCCGTCCAACACTAGCAAGGGGTAGCACCATGAGGGTTACTAACTGTACAAAATTAATGACACAAACCATATACAATGTGTCCAAATATGGGAGACCAAACAAGGAATGGCACGTGTCATATTTGCCTGAACCATTCCATATTAAGTGTTCTTGTAAAAGGATGGAATCCTTTGGTCTTCCATGCGATCACATTATTGGTGTAATGGTACATCTAGACATTAATGAGATGCCAAAATGTTTAGTGCTTGATAGATGGACAATGGCAGCAAAGGAAAGTTTATATGAAGTAAATGATGAACGAAGTTCCAATTTGGACTCTGTTTTCATGGCTCGTTGTGGTGCATTAGGTGCATTGTGCAGAAAGCTGATAATGGTGGCTGCAAAATCAACTCAAAGGTTCAATGCTGAAAGAGAATTAATCAGTCAAAGAATTGAAGCGTATAATGCAATTGATGCATCAGATGAGGGTAAAAATAACAAGTATGAGGAAATTCCGACTGGTGAAATGAAGGATCCCGTGAGAGTAGTCACGAAAGGGTGTGGAGGCAGCTCGTCTTCAATTGGAAGTCAACGCAGGAGGCGTCAGGCATGTACACTATGTGGGCAAGTTGGGCATAATAAGAAAACGTGTTCTCGGAACAGAAATGGTGGTAACAATGGTGTGTTGCATGAGGACCCCAGAATTATCCCAGAAGACGAAGAAGAAAATGATGACCCAATTTTTGGTAGTCATATGGAAAGTAACGGTGATGCAACGTGTCCATAA 2328 0.4046 MDENLENCDGFDGGLEDIEQMNDEDVVIENALNRVSIDGEDDFLKIDPSMLNEDNAMRIHFPDVEVAYNFYNWYGRLKGFSARKGKVRKNKSREPVEKIFLCHREGEREKKNSEQKEAQVRESKPQTRTGCLARMKVRVDKETDRWNVTAFSDVHNHKMLAGKYSGMLPAHRRMTEADVMQMNNLRMVGISTPHIYGTFASQSGGYQHIGFNKRDIYNEIVKQRQVHTSDVKSAIQYLRALAKDDKAMLFRHTVDGEGRLQRLFWCDGHSQVDYKVFGDVLAFDATYKRNKYNFPLVIFSGVNHHNQTTVFASAVIADETEDSYVWLLEQLMVAMKGKAPQAVITDGDVAIRNAIRRVLPKSHHRLCAWHLLRNATSNVKNSKMVTRLKKCMLGDYEISEFQRRWDRMVTECGLQDNTWVKELYERKSMWATAWIKGSFFAGVRTTSRCEGLHAQPGKFVQSRNGFLDFLQNFNHCIESFRYKEVEADYGTVVGEPELQTNLHALERSASRMFTREVLKLVRPTLARGSTMRVTNCTKLMTQTIYNVSKYGRPNKEWHVSYLPEPFHIKCSCKRMESFGLPCDHIIGVMVHLDINEMPKCLVLDRWTMAAKESLYEVNDERSSNLDSVFMARCGALGALCRKLIMVAAKSTQRFNAERELISQRIEAYNAIDASDEGKNNKYEEIPTGEMKDPVRVVTKGCGGSSSSIGSQRRRRQACTLCGQVGHNKKTCSRNRNGGNNGVLHEDPRIIPEDEEENDDPIFGSHMESNGDATCP 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi406g00050 775 MobiDBLite consensus disorder prediction 107 123 - -
Sebi406g00050 775 MobiDBLite consensus disorder prediction 732 775 - -
Sebi406g00050 775 MobiDBLite consensus disorder prediction 107 127 - -
Sebi406g00050 775 Pfam FAR1 DNA-binding domain 69 160 IPR004330 -
Sebi406g00050 775 ProSiteProfiles Zinc finger SWIM-type profile. 545 593 IPR007527 GO:0008270
Sebi406g00050 775 PANTHER OS01G0519700 PROTEIN 57 704 - -
Sebi406g00050 775 Pfam SWIM zinc finger 558 591 IPR007527 GO:0008270
Sebi406g00050 775 Pfam MULE transposase domain 280 374 IPR018289 -
Sebi406g00050 775 SMART 26again6 568 595 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi406g00050 Sebi-Chr406 586634 589057 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi406g00050 MULE 3e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi406g00050 - - tpra:123905832 694.501