Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi406g00042 ATGGAAAATATTATACCACCAGGTTATCGGTTCTACCCTACAGAAGAAGAGCTTATTAAGTTCTATCTTCACAATAAACTCGAAGGAGAGAGGGAGGACATGAATCGCGTCATACCAATCCTTAATATTTATGACTTCCACCCATCCCAACTCCCACAAAATTCAGGAGAGGTGAGTGTGACAGAGACGGAGCAATGGTTCTTTTTCGTTCCGAGGCAAGAAAGTGAAGCGAGAGGAGGGAGACCAAAGCGTCTCACAAATACAGGGTACTGGAAAGCTACCGGCTCTCCGAATCATGTTTATTCCTCTGATAATCGGATCATCGGCTTGAAAAGGACCATGGTTTTCTATGACGGAAGAGCCCCTAACGGAACTAAAACCGATTGGAAGATGAATGAGTATAAGGCCATCAAAATCGGATCAGCATCCTCTTCTCCCATGGGGGAGAGTCAGAGAAGTAGTCAAACAGTAATAAGCTCACCAGAAAGTTCGTTATCCTCTGGCCAAATGGACGTTGATGAGGAACCTTTCTTGGACTGGGAGCAGGTGGATCTCTTCTTGGGATCCGAACCATGA 576 0.4531 MENIIPPGYRFYPTEEELIKFYLHNKLEGEREDMNRVIPILNIYDFHPSQLPQNSGEVSVTETEQWFFFVPRQESEARGGRPKRLTNTGYWKATGSPNHVYSSDNRIIGLKRTMVFYDGRAPNGTKTDWKMNEYKAIKIGSASSSPMGESQRSSQTVISSPESSLSSGQMDVDEEPFLDWEQVDLFLGSEP 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi406g00042 191 Gene3D NAC domain 14 161 IPR036093 GO:0003677|GO:0006355
Sebi406g00042 191 MobiDBLite consensus disorder prediction 143 170 - -
Sebi406g00042 191 ProSiteProfiles NAC domain profile. 5 164 IPR003441 GO:0003677|GO:0006355
Sebi406g00042 191 SUPERFAMILY NAC domain 4 136 IPR036093 GO:0003677|GO:0006355
Sebi406g00042 191 Pfam No apical meristem (NAM) protein 6 135 IPR003441 GO:0003677|GO:0006355
Sebi406g00042 191 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 136 - -
Sebi406g00042 191 MobiDBLite consensus disorder prediction 142 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi406g00042 Sebi-Chr406 481074 482263 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi406g00042 1 137 NAC Transcription Factor Family AT5G22380 60.870 1.51e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi406g00042 NAM 3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi406g00042 - - gmx:100777948 279.641