Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sebi406g00025 | ATGGATACATCAAATCCTGCTGTCTTTGTCAATGCAGAACTATTACACTTCTATGTTGGAAGAAGGGTTCGGGCAGTGATGCAGGTTATGCGATCGGACGGTGTAGCTGTTATTGGAAAATCCACGGATGAGAAGCAGCTAGTTGTAAAAGGATCTCCACCACCTGCTCCTCTTACAACTTTTGTAGAAGTTATTGGTATTGTTGACAGCGATAAGTCTATCCGTGCTGAGACATGGACCAATTTTGGTGATGCAATTGATATGGTCAGCTACCAAAAGCTTTGTCAGCTTGCAAATGGAGAATTTAAACACTTGTTCCTGTGA | 324 | 0.4228 | MDTSNPAVFVNAELLHFYVGRRVRAVMQVMRSDGVAVIGKSTDEKQLVVKGSPPPAPLTTFVEVIGIVDSDKSIRAETWTNFGDAIDMVSYQKLCQLANGEFKHLFL | 107 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sebi406g00025 | 107 | Gene3D | - | 1 | 107 | IPR012340 | - | |
| Sebi406g00025 | 107 | Pfam | Replication factor A protein 3 | 1 | 103 | IPR013970 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
| Sebi406g00025 | 107 | CDD | RPA3 | 6 | 106 | - | - | |
| Sebi406g00025 | 107 | PANTHER | REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED | 1 | 107 | - | - | |
| Sebi406g00025 | 107 | SUPERFAMILY | Nucleic acid-binding proteins | 6 | 106 | IPR012340 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sebi406g00025 | Sebi-Chr406 | 320860 | 321336 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sebi406g00025 | 1 | 107 | Core DNA Replication Machinery Family | AT4G18590 | 65.421 | 7.31e-51 | 154 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sebi406g00025 | K10740 | - | gmx:100306641 | 181.03 |