Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi406g00022 ATGCGAGTAGCAGATACTAAGGATGAGGTTGAGAAAAAGAAACACGCTGATCTTCTTGCAATTCCACCTCACGGATCAGAGGTCTATATTGGGGGTATTCCTCAAAATGTTTCTGAAGAAGATTTGAGGGTCTTCTGTCAATCTGTGGGAGAAGTGTCAGAGGTAAGGGTTATGAAGGGGAAAGAATCAGGTGAAGGATTAGGTTATGCTTTTGTGACCTTCAAGACAAAGGAATTGGCATCTAAGGCTATTGAGGAGCTGAACAATTCTGAATTTAAGGGAAAAAGAATAAAGTGCTCAACATCTCAAGCTAACAATAGGTTGTTCATTGGTAATGTTCCTAAAAGTTGGACTGTAGAAGATATGAAGAAGGTTGTTGCAGAGGTTGGCCCTGGAGTCCTTTCTGTGGAGCTCTTGAAGGATCCACAGAGTTCTGGCCGTAATAGGGGATTTGCTTTTATTGAGTATTACAATCATGCTTGTGCAGAATATTCAAGGCAGAAGATGTCAAACTCTAAATTTAAACTTGACAATAATGCTCCAACAGTGAGCTGGGCTGACCCAAGGAATTCTGAATCATCTGCAGCATCCCAGGTAAAAGCAGTGTATGTAAAGAATCTTCCAGAAAACATTACTCAGGATTGCCTTAAGAAGCTGTTTGAACATCATGGAAAAATCACAAAAGTGGTTCTCCCTCCTGCTAAAGCTGGACAAGAAAAAAGCAGATTTGGTTTTGTGCACTTTTCTGATAGGTCAAGTGCCATGAAGGCGTTGAAGAATACAGAGAAGTATGAAATTGAAGGCCAAACTTTGGAGTGTTCACTTGCTAAGCCACAGGCAGATCAGAAGTCGTCTGGTGCATCAAATTCACAAAAATCAGTTGTACTTCCCACTTATCCACCTCGTCTTGGTTATGGTATGGTTGGAGGTGCATATGGTGCTATTGGTGCAGGATATGGTGCTGCTGGCTTTGCACAACCACTTATGTATGGTGCGGGAGCAACCCCTGCTGGCATGGCAATGATGCCAATGCTTTTACCAGATGGAAGGATCGGATATGTGTTGCAACAGCCGGGTTTGCAACAGCATGCTCCTTCACCAGTATCCCGTAATGGAAGAGGTGGTGGTGGTAGCTCAAGTGGTGGAAAACGCAATAATGATAATAATAACCGTAACCGTGGACATGGCCGATATCATCCCTACTAA 1206 0.4295 MRVADTKDEVEKKKHADLLAIPPHGSEVYIGGIPQNVSEEDLRVFCQSVGEVSEVRVMKGKESGEGLGYAFVTFKTKELASKAIEELNNSEFKGKRIKCSTSQANNRLFIGNVPKSWTVEDMKKVVAEVGPGVLSVELLKDPQSSGRNRGFAFIEYYNHACAEYSRQKMSNSKFKLDNNAPTVSWADPRNSESSAASQVKAVYVKNLPENITQDCLKKLFEHHGKITKVVLPPAKAGQEKSRFGFVHFSDRSSAMKALKNTEKYEIEGQTLECSLAKPQADQKSSGASNSQKSVVLPTYPPRLGYGMVGGAYGAIGAGYGAAGFAQPLMYGAGATPAGMAMMPMLLPDGRIGYVLQQPGLQQHAPSPVSRNGRGGGGSSSGGKRNNDNNNRNRGHGRYHPY 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi406g00022 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 104 IPR000504 GO:0003723
Sebi406g00022 401 Gene3D - 106 187 IPR012677 -
Sebi406g00022 401 MobiDBLite consensus disorder prediction 360 387 - -
Sebi406g00022 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 175 IPR000504 GO:0003723
Sebi406g00022 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 271 IPR000504 GO:0003723
Sebi406g00022 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 98 IPR000504 GO:0003723
Sebi406g00022 401 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 107 187 - -
Sebi406g00022 401 Gene3D - 2 105 IPR012677 -
Sebi406g00022 401 MobiDBLite consensus disorder prediction 360 401 - -
Sebi406g00022 401 SUPERFAMILY RNA-binding domain, RBD 22 103 IPR035979 GO:0003676
Sebi406g00022 401 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 21 387 - -
Sebi406g00022 401 SMART rrm2_1 27 100 IPR003954 GO:0003676
Sebi406g00022 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 278 IPR000504 GO:0003723
Sebi406g00022 401 SMART rrm1_1 27 100 IPR000504 GO:0003723
Sebi406g00022 401 SMART rrm1_1 107 184 IPR000504 GO:0003723
Sebi406g00022 401 SMART rrm1_1 201 274 IPR000504 GO:0003723
Sebi406g00022 401 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 189 298 - -
Sebi406g00022 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 188 IPR000504 GO:0003723
Sebi406g00022 401 CDD RRM_SF 28 100 - -
Sebi406g00022 401 Gene3D - 189 320 IPR012677 -
Sebi406g00022 401 SUPERFAMILY RNA-binding domain, RBD 105 279 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi406g00022 Sebi-Chr406 299797 302671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi406g00022 28 345 Eukaryotic Initiation Factors Gene Family AT4G34110 26.027 1.21e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi406g00022 K13161 - gmx:100798476 590.882