LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi405g00020	ATGGAGTGCAACAAAGATGAGGCAGCTAGGGCCAAAGAAATAGCAGAGAGGAAATTTTCTGAAAGGGAATATACTGGTGCAAAAAGAAAGCAGTACAGGAAGTTGGCTCTCACTCTTCATCCTGACAAAAACAAGTCTTTAGGTGCAGAGGGTGCATTTAAGCTTGTTTCAGAGGCATGGAGTTTACTATCAGATAAGGTCAAGAGACTAGCATATAACCAGAATAGGAGTTCAGAAGGTTTTCAGCATTATGCTCCCAACCATGTCGGGTCTCGATCAGAAGCACCCAGTTCAAATGTTTTTTATAATCTTAAGAAGAATGCAACTTCAAATGAGAGAACTGGAAATAATAATGTGCAGCCACCTGCAACCTCCATTCCTCCACATAATATAGCTGAGAAGGGTCCACCTCCGAATGTTGTCAAGTCATCTAAATGGGCTCCTCGGCAACATCATCAGAAGTCACAACATCATGCTGGAAGGAATCACCCTATGAATCCAGGAAGAACATGTGCAGTTTCTCAAAACACAGATTCTTTTAATAATACAAACTTCCAGTGGGGTCCTCACTCAAGAATGGCTGGTTTTGTTAACACAGATGAACCATCATCTGTCGCTGCTGCAAGTGTTAAGCAGCAGGCAAGTGAGAAAAGAAGAGAATCTGAGGGAGCCCCATCAATTGCTGCATGGGAGAGGAGTCGCATGTATAAGAGATCTGATGGTTCTTTTAGTGATGTTGGAAATCCTATGAAGAAAATAAAGAAAGATGATATTTACATGAACAGGGTAAATCATATGACCATGGGAAATGGAGCAACTGGTTTGGGCAGTTTTTATGAATCAAGAAAGGCCAACATAGGAACAGAAAGGACTTGTGGTTTTTCAGGTGTTACTAGCAAGCACTGCAGCATAAGAGAGTTGTCAATGTCTGAATTACGAAAGATGTTGATCGGTAAGGCACAGATCGAAATTCGCAAGAAACTTCAAGATTGGAGATCAATGGCTGAAGCTAAGGTTACAAACAAGGACAAAGGAAATGAGAGGCAGAAAAGCACATTTAATGACAAAACAACTGGTCCAGAGAAGCATGGAGGTTCCACTATAAATGGTAACAGGCATGTGGACAGTGATTCTATCCCCGTCACATCTGATGACATGGTAAAGGATAGGAGCCAATCCTATGTTACAATCAATGTTCCAGATTCTGATTTTCACAATTTTGACTTGGATAGAGCTGAAAATTCCTTTGAGGAGGACCAGGTCTGGGCTGCTTATGATGATGATGATGGAATGCCTCGATATTATGCTAGAATTCACAAGGTGATCTCCACAAAGCCATTCAAAATACGGATCAGTTGGCTTAACTCTCGAAGCAACAGTGAATTGGGCCCAATAGATTGGGTAGGTTCTGGTTTTTACAAAACTTGTGGGGATTTCAGGACTGGTGGACAAAAGGCACCAGAGGAGTTGTTCGCATCTTTCCTGGAAAGGGGGAAGTCTGGGCGCTCTATAAAAAACTGGTCTCCTGATTGGAATCAAAATACTCCAGATGAAGTGATACACAAGTATGATATGGTGGAGGTGCTTGAAGATTTCAATGAGGAGGAAGGTGTGTTAGTTACACCACTTGTCAAGGTTGATGGTTTTAAGACAGTGTTTCACAGGGACAGCCGTGATCAGGTAAGGAAGATTCCAAAAGTTGAGATGTTTCGCTTCTCTCATCAGGTTCCTAACTACTTGCTTACTGGACAAGAAGCTCATAATGCTCCAAAGGGCTGTAGAGAGTTGGATCCTGCAGCTACTCCTTTAGATCTTCAGACAACAACAGAAGCTAATGAGGCATTGGATAATGTTGGAAAATCTAAGGAAGACAAATTGCCCATTTCACCTGAAAAACGTGCATCTGGTAAGGCAGAGAATGCTTCGTAA	1929	0.4199	MECNKDEAARAKEIAERKFSEREYTGAKRKQYRKLALTLHPDKNKSLGAEGAFKLVSEAWSLLSDKVKRLAYNQNRSSEGFQHYAPNHVGSRSEAPSSNVFYNLKKNATSNERTGNNNVQPPATSIPPHNIAEKGPPPNVVKSSKWAPRQHHQKSQHHAGRNHPMNPGRTCAVSQNTDSFNNTNFQWGPHSRMAGFVNTDEPSSVAAASVKQQASEKRRESEGAPSIAAWERSRMYKRSDGSFSDVGNPMKKIKKDDIYMNRVNHMTMGNGATGLGSFYESRKANIGTERTCGFSGVTSKHCSIRELSMSELRKMLIGKAQIEIRKKLQDWRSMAEAKVTNKDKGNERQKSTFNDKTTGPEKHGGSTINGNRHVDSDSIPVTSDDMVKDRSQSYVTINVPDSDFHNFDLDRAENSFEEDQVWAAYDDDDGMPRYYARIHKVISTKPFKIRISWLNSRSNSELGPIDWVGSGFYKTCGDFRTGGQKAPEELFASFLERGKSGRSIKNWSPDWNQNTPDEVIHKYDMVEVLEDFNEEEGVLVTPLVKVDGFKTVFHRDSRDQVRKIPKVEMFRFSHQVPNYLLTGQEAHNAPKGCRELDPAATPLDLQTTTEANEALDNVGKSKEDKLPISPEKRASGKAENAS	642

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi405g00020	642	CDD	DnaJ	29	65	IPR001623	-
	Sebi405g00020	642	MobiDBLite	consensus disorder prediction	616	632	-	-
	Sebi405g00020	642	MobiDBLite	consensus disorder prediction	337	357	-	-
	Sebi405g00020	642	Pfam	DnaJ domain	29	73	IPR001623	-
	Sebi405g00020	642	PANTHER	BNAC03G44070D PROTEIN	29	602	-	-
	Sebi405g00020	642	Pfam	Domain of unknown function (DUF3444)	396	585	IPR024593	-
	Sebi405g00020	642	MobiDBLite	consensus disorder prediction	108	172	-	-
	Sebi405g00020	642	MobiDBLite	consensus disorder prediction	608	642	-	-
	Sebi405g00020	642	Gene3D	DnaJ domain	18	118	IPR036869	-
	Sebi405g00020	642	ProSiteProfiles	dnaJ domain profile.	7	76	IPR001623	-
	Sebi405g00020	642	MobiDBLite	consensus disorder prediction	337	383	-	-
	Sebi405g00020	642	SMART	dnaj_3	22	68	IPR001623	-
	Sebi405g00020	642	SUPERFAMILY	Chaperone J-domain	29	92	IPR036869	-
	Sebi405g00020	642	MobiDBLite	consensus disorder prediction	108	125	-	-
	Sebi405g00020	642	PRINTS	DnaJ domain signature	48	68	IPR001623	-
	Sebi405g00020	642	PRINTS	DnaJ domain signature	32	47	IPR001623	-
	Sebi405g00020	642	MobiDBLite	consensus disorder prediction	204	226	-	-
	Sebi405g00020	642	MobiDBLite	consensus disorder prediction	358	377	-	-
	Sebi405g00020	642	ProSitePatterns	Nt-dnaJ domain signature.	53	72	IPR018253	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi405g00020	Sebi-Chr405	713342	715590	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi405g00020	29	73	SUVH1 or 3-interacting DNAJ domain-containing protein superfamily	AT2G01710	48.889	5.52e-07	50.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi405g00020	-		-	gmx:100792212	865.529