Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi404g00029 ATGCGCAACTGGGGCAAATGGGTGTCCGAAATTCGTGAGCCTCGCAAGAAATCACGCATCTGGCTGGGGACTTTTGCCACCCCTGAAATGGCAGCACGAGCCCACGATGTTGCAGCTTTGAGCATCAAGGGCCATTCAGCGATTCTCAACTTCCCAAAGATAGCTCACGTGCTTCCAAGACCCCAAACCCTGACCCCACGTGACATCCAAGCGGCGGCTGCACAAGCCGCCGCCATGGTGGAATTCGACCCTCACCCATTACACTCACTTCCACCATCATCATCAGAAGAAGGGCCAGAGTCTTCAGAGCTGAGCGAGATTGTTGAATTGCCTAATATAGAAGAGAGCTTCGATTCGGTGGACTCGAGAACCGAGTTCAAATCGGTTGACTCGGTGGATAGTTGGGTGTACCCGCCATTGGGCAGTTTTCTGACATGA 438 0.532 MRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALSIKGHSAILNFPKIAHVLPRPQTLTPRDIQAAAAQAAAMVEFDPHPLHSLPPSSSEEGPESSELSEIVELPNIEESFDSVDSRTEFKSVDSVDSWVYPPLGSFLT 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi404g00029 145 SMART rav1_2 1 58 IPR001471 GO:0003700|GO:0006355
Sebi404g00029 145 CDD AP2 1 52 IPR001471 GO:0003700|GO:0006355
Sebi404g00029 145 FunFam Ethylene-responsive transcription factor 2 1 53 - -
Sebi404g00029 145 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 117 - -
Sebi404g00029 145 Pfam AP2 domain 3 45 IPR001471 GO:0003700|GO:0006355
Sebi404g00029 145 ProSiteProfiles AP2/ERF domain profile. 1 52 IPR001471 GO:0003700|GO:0006355
Sebi404g00029 145 SUPERFAMILY DNA-binding domain 2 52 IPR016177 GO:0003677
Sebi404g00029 145 Gene3D AP2/ERF domain 1 54 IPR036955 GO:0003700|GO:0006355
Sebi404g00029 145 MobiDBLite consensus disorder prediction 83 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi404g00029 Sebi-Chr404 707335 707772 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi404g00029 1 139 AP2-EREBP Transcription Factor Family AT5G11590 56.774 2.82e-47 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi404g00029 AP2 5.8e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi404g00029 K09286 - gmx:100784419 210.69