Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi403g00064 ATGAAGTCTGCAAAGGAGGATTGTACCCAGGATGAAGAGCTAGAAAACGAAGACACCTTTTTTCTTAAGAAAGAATCCTCAAATACCCCAAGAGAAGAACTGAGGGTGAAAGTGGATGGGAAGAGTACTGATCAAAAGCCAAACACGCCAAGATCAAAACATTCTGCAACAGAGCAGCGGAGAAGAAGCAAAATTAATGACAGATTCCAGATGCTACGAGAGCTTATTCCACACAGTGACCAAAAGAGGGACAAAGCATCTTTTTTGTTAGAGGTCATTGAGTACATTCATTTTTTACAAGAGAAGGTGCATAAATATGAAGGTTCATTCCAAGGGTGGAATAACGAGCCTGAAAAATTGATTCCATGGAGAAATAATGACAGGCCAGTAGAAAATTTCCAATCTCGTGGCACAAATAGTGGGACAAGTCCATCTCCAACATTGTTGTTTGCCTCGAAGGTTGACGAGGTCTCCCCAACAATACCTGGAAGTACCCAAAATGTAGAATCTGGCTTGAGCACAGCAACTAACTTCAAGACAATGGATCATCAGTCTGGAATAATGAACAGGGCTTTTCCAATTCCTATTTCTTCCCAACCAAATTTCTTCACTCCAACTCAAATCGGTAGTCCAGGTGGAGTAGTGTCTCAGCTCACACATAGATTGGCATCTGATGCAGAGAACACCATATATCAACCTTCAACGGATTCTCAGACTAAAACTGCTGCCAGTGGAAAGCTGAAAGAGAAAGACCTCACTATTGAAGGTGGTGCCATTAGCATATCAAGTGTGTACTCAAAAGGGTTGTTGGATACACTTACACATGCCTTACAGAGTTCGGGGGTGGATTTGTCACAGGCTAACATTTCAGTGCAAATTGAACTTGGTAAGCAAGCAAGCATCAGACCAACGGTACCAATGTCAATGTGCGGTGCTAAGAATGATGGGGTTCCTTCTAACAATCAAAGGATGATGCGCTCTAGAGGTGCTGGCTCTGAGAAGTCTGATCAAGCAGCAGTAAAGAAGCTAAAGGCGTGCAGAAGTTAA 1047 0.4269 MKSAKEDCTQDEELENEDTFFLKKESSNTPREELRVKVDGKSTDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWNNEPEKLIPWRNNDRPVENFQSRGTNSGTSPSPTLLFASKVDEVSPTIPGSTQNVESGLSTATNFKTMDHQSGIMNRAFPIPISSQPNFFTPTQIGSPGGVVSQLTHRLASDAENTIYQPSTDSQTKTAASGKLKEKDLTIEGGAISISSVYSKGLLDTLTHALQSSGVDLSQANISVQIELGKQASIRPTVPMSMCGAKNDGVPSNNQRMMRSRGAGSEKSDQAAVKKLKACRS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi403g00064 348 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 119 IPR036638 GO:0046983
Sebi403g00064 348 MobiDBLite consensus disorder prediction 16 65 - -
Sebi403g00064 348 SMART finulus 55 105 IPR011598 GO:0046983
Sebi403g00064 348 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 99 IPR011598 GO:0046983
Sebi403g00064 348 MobiDBLite consensus disorder prediction 1 65 - -
Sebi403g00064 348 MobiDBLite consensus disorder prediction 311 348 - -
Sebi403g00064 348 Gene3D - 46 120 IPR036638 GO:0046983
Sebi403g00064 348 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 3 345 IPR044295 GO:0003700|GO:0006351|GO:0046983
Sebi403g00064 348 MobiDBLite consensus disorder prediction 314 328 - -
Sebi403g00064 348 Pfam Helix-loop-helix DNA-binding domain 51 100 IPR011598 GO:0046983
Sebi403g00064 348 FunFam BHLH domain class transcription factor 47 119 - -
Sebi403g00064 348 CDD bHLH_AtBIM_like 48 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi403g00064 Sebi-Chr403 913243 916597 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi403g00064 1 300 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 48.525 7.42e-70 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi403g00064 HLH 2.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi403g00064 - - gmx:100808016 552.362