Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi403g00059 ATGGCAGATGTCACCTACCTCCTTCACCACCATGAACCCGACGATGACCAAACCCTAATCCCCTTACCCTTCTGGTCCCCTCATCACGATTTCGATTTCGATTGTCGATTTCTACTCTTTCCGATCCTGAATTCCCTCCCAATTTCTCCCGCGAAAACCAGGTCAATTTCGTCATGGACCTTTTCCAACAGCGCATCGAGCAATCCCAGGTCACCACCGATCCCGTCCTCCCAATCCCTAAACGACTCCGTTTTCGATGGTTTAGAATTTGGTCTCGATTTAGGGTTCGCCCCCGACGACGCCGAACGATTTTCTTCATCAGTACTAGGGTTTCATTACCGGATCCGAATCCGGCGAGTGCTCCTTTCGACGACAACTGCGTCCGCCTCGCCGGTTTCGGATCAGACTCCGACGATGAAGATGCCAACACTGCGGATCCTAGGGGATCTGCATGCATTACCGACTAAGAGTATCACGAAGACGACGACGTTTCTAACCATCCCTCTCTGTTGGGACTCGCTTCACTTGGAGGATAACAGGGAGAACAACAACTACGAGATTTCGAGTGGGAGGGAAGTGGACGGTCGCGTCGACGAGAGGGAGAACCTTCCGTCTGTGGTTGTGACCCAACAAGACGTGGACAACAACAATGCACTCTGTGCGGTTTGCAAAGATGAGTTTGGTGTTGGGGAAGAAGTGAAACAGTTGCCGTGTTCGCATCGCTACCATGGTGATTGCATTGTGCCTTGGTTGGGGATTCGGAATACTTGCCCTGTTTGTCGTTATGAGTTCCCCACTGATGATGCTGAATATGAGCTTAGGAGGGTCCAAAGATCTTCCCGGAGCATTTAA 852 0.5117 MADVTYLLHHHEPDDDQTLIPLPFWSPHHDFDFDCRFLLFPILNSLPISPAKTRSISSWTFSNSASSNPRSPPIPSSQSLNDSVFDGLEFGLDLGFAPDDAERFSSSVLGFHYRIRIRRVLLSTTTASASPVSDQTPTMKMPTLRILGDLHALPTKSITKTTTFLTIPLCWDSLHLEDNRENNNYEISSGREVDGRVDERENLPSVVVTQQDVDNNNALCAVCKDEFGVGEEVKQLPCSHRYHGDCIVPWLGIRNTCPVCRYEFPTDDAEYELRRVQRSSRSI 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi403g00059 283 Pfam Ring finger domain 220 261 IPR001841 -
Sebi403g00059 283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 267 IPR013083 -
Sebi403g00059 283 ProSiteProfiles Zinc finger RING-type profile. 220 261 IPR001841 -
Sebi403g00059 283 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 94 261 - -
Sebi403g00059 283 SMART ring_2 220 260 IPR001841 -
Sebi403g00059 283 CDD RING-H2_RNF126-like 220 261 - -
Sebi403g00059 283 SUPERFAMILY RING/U-box 204 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi403g00059 Sebi-Chr403 849708 850904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi403g00059 201 275 C3H Transcription Factor Family AT3G02340 62.667 7.41e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi403g00059 - - mnt:21395864 149.058