Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi403g00038 ATGCCTATTGAATATGATGAGAAGAGAGAAGGGAGTATTATGAAGATTCCAAAAATAACAAACAAGAGTCAAAAAAAGTTTCTAGGAGTGAGACAAAGGCCTTCAGGAAGATGGATTGCTGAGATCAAGGACTCTTCACAGAAACTAAGGGTGTGGTTAGGGACTTTTGACAGAGCAGAAGAGGCTGCCCTGGCTTATGACTGTGCTGCAAGGCTTCTTAGAGGAAGAAATGCCAAAACAAACTTTCCAAACCCAGGAATCATAAACACTCATGAGGAAGATTGCAGCATTTTGGGAAAGAATCCCAGGGCATACCAGATTCTTAAGCATGCAGTCATGAAGAACCATGCACTTCACTCATCATCCGTTTATTCCACCACAGTCATGCCTTGGAAAAATCAGAACATGAGAGTTGAAGATCACACACTTGTTGAGGAAACTATAGTTTGCTTCATTCCTGAAGAAGGTACTGGGTGTAGTGGAATTTCATTTGGAAGTTCAAAGGTTTATTCTTCTGTTGTTGTAGCTCCTTCTTTCAGTGCTTCTTCTCACTGTCAAACAGGATAA 567 0.4092 MPIEYDEKREGSIMKIPKITNKSQKKFLGVRQRPSGRWIAEIKDSSQKLRVWLGTFDRAEEAALAYDCAARLLRGRNAKTNFPNPGIINTHEEDCSILGKNPRAYQILKHAVMKNHALHSSSVYSTTVMPWKNQNMRVEDHTLVEETIVCFIPEEGTGCSGISFGSSKVYSSVVVAPSFSASSHCQTG 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi403g00038 188 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Sebi403g00038 188 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Sebi403g00038 188 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Sebi403g00038 188 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
Sebi403g00038 188 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 112 - -
Sebi403g00038 188 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700|GO:0006355
Sebi403g00038 188 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Sebi403g00038 188 SUPERFAMILY DNA-binding domain 26 83 IPR016177 GO:0003677
Sebi403g00038 188 FunFam ethylene-responsive transcription factor RAP2-11 25 84 - -
Sebi403g00038 188 CDD AP2 25 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi403g00038 Sebi-Chr403 620107 620673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi403g00038 23 84 AP2-EREBP Transcription Factor Family AT5G19790 69.355 1.06e-25 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Sebi403g00038 AP2 1.8e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi403g00038 - K09286 pvu:PHAVU_003G180000g 278.1