Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi403g00032 ATGGAGCCCATGGACATCGTTGGCAAATCAAAGGAAGATGCCTCGCTTCCTAAAGCAACAATGACAAAAATTATTAAAGAGATGTTGCCTCCAGATGTACGTGTTGCAAGAGATGCTCAAGATCTATTGATTGAGTGTTGCGTAGAGTTTATAAACCTTGTCTCATCAGAGTCCAATGAAGTCTGTAATAGAGAGGAAAAACGAACTATTGCACCTGAGCATGTATTGAGGGCTCTAGAGGACTCTTTAAGAGGTGGTGGTAAATGGAGCAATGGAGCTGAGATGACTGAGGAAGAAGCATTAGCAGAGCAGCAAAGGATGTTTGCAGAGGCACGTGCTAGGATGAATGGTGGGGCCATTGCTTCCAAGCAGCCAGATGCTGACCAAAGTTTAGATAGCTAA 402 0.4403 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNREEKRTIAPEHVLRALEDSLRGGGKWSNGAEMTEEEALAEQQRMFAEARARMNGGAIASKQPDADQSLDS 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi403g00032 133 PANTHER PROTEIN DR1 HOMOLOG 81 132 IPR044255 -
Sebi403g00032 133 Gene3D Histone, subunit A 7 86 IPR009072 GO:0046982
Sebi403g00032 133 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Sebi403g00032 133 SUPERFAMILY Histone-fold 12 120 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi403g00032 Sebi-Chr403 532436 535918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi403g00032 1 129 CCAAT-DR1 Transcription Factor Family AT5G23090 67.949 3.13e-68 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Sebi403g00032 CBFD_NFYB_HMF 6.9e-22 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi403g00032 K21751 - gmx:100807912 246.514