Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi402g00048 ATGGCTGAACAACACATGACATTTTCCCTTTCTCGTAGCTTCGATGATGACTTCTCAAACCAACACACTCCCTATTTCCCTGGTAGCGGTGGAGAGGGGTCCTCCTTTTACTGGCAACCGCCACCCTCCACCATCCCTCCTCCTCCCCACCACCAGGTAGCTCCGCCACCATCGTCTAAGCCACGTGGCAGACCCCCAGGTTCCAAAAACAAGCCAAAGCCACCGCTTGTGATCACCCAAACCAACGAGCAAGACATGAAACCCGTGGTGATCCATGTGGACCCAGGTGTAGACGTGATGGAAGCCATTATTAACTATGCTCACAACTACAACGCCGGAATCATGGTGCTTAGTGGGTCTGGTTCTATTTCCAACTTGACTCTTTCCCACTCTGTTTCCTATTCTCCTTCTTCTTCTTTCACCCTTCATGGACCCTTTACTTTGTTTGCCTTTAGCGGTGCCTGTATAAGTTTCCCTAATTCCCCTCTTGATGGTGCTTCGAATTCCTCATCCAACCCTAACATGTACACATCATCTTCCTTTAGCATTTCGTTTACAAGCGCTCAAGGTAAGATGTATGGTGGGATTGTTGGTGGGAAGGTTGTGTCGTCTAATGATGTGCAGGTGGTGGTTAGCTTGCTCAAGAATCCTGATTTTCATAGGGTTCCTGGTATCAATGAAAATGACG 688 0.484 MAEQHMTFSLSRSFDDDFSNQHTPYFPGSGGEGSSFYWQPPPSTIPPPPHHQVAPPPSSKPRGRPPGSKNKPKPPLVITQTNEQDMKPVVIHVDPGVDVMEAIINYAHNYNAGIMVLSGSGSISNLTLSHSVSYSPSSSFTLHGPFTLFAFSGACISFPNSPLDGASNSSSNPNMYTSSSFSISFTSAQGKMYGGIVGGKVVSSNDVQVVVSLLKNPDFHRVPGINEND 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi402g00048 229 CDD DUF296 87 211 IPR005175 -
Sebi402g00048 229 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 52 227 IPR014476 GO:0003680
Sebi402g00048 229 SUPERFAMILY AF0104/ALDC/Ptd012-like 84 223 - -
Sebi402g00048 229 Pfam Plants and Prokaryotes Conserved (PCC) domain 87 214 IPR005175 -
Sebi402g00048 229 ProSiteProfiles PPC domain profile profile. 83 229 IPR005175 -
Sebi402g00048 229 MobiDBLite consensus disorder prediction 1 28 - -
Sebi402g00048 229 MobiDBLite consensus disorder prediction 40 72 - -
Sebi402g00048 229 Gene3D - 86 229 - -
Sebi402g00048 229 MobiDBLite consensus disorder prediction 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi402g00048 Sebi-Chr402 932602 933289 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi402g00048 60 229 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 38.235 8.90e-33 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi402g00048 - - tpra:123915288 164.081