Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi402g00044 ATGTCTTCTTCACTCGTGAAGATCCAAGACGAACAGGTCCTCGCCAACGATCTTCAGGATCTTTCAATCAAAGATCTGAGGGAAAAGGGGAGTGAAGAAGAGGGATTTGGAAACCATGGGGGAATCTGTGCTATTTGCTTGGATAAGATAGTGCTACAGGAAACTGCTCTTGTAAAAGGTTGCGAGCATGCCTACTGTGTAACATGCATCCTTCGCTGGGCCACGTACAGTCAGAACGTTACCTGCCCTCAGTGTAAACATCCATTTGAGTTCCTCAATGTCCATCGTTCTCTTGATGGCAGCATTCAAGATTACATGTTTGAGGAAAGTGTCTGCCTGCTACTTCGGGCCCAGTGGTTCAAACCGATAACTATTGTTGAAGACCATGTGGTTCATGAAGATACCTATGATGAAATTGAAGACTATTATCAGTATGAGGAGGAAGATGATGATCTAGATGATGAAGTTTACTATGGAGGCTCATCGAGTTTTCGCATTGGCAACCGTAGATGGGGAGACAATGGTTATGTTAGGGCTGGGCGTCAAGAAGCTCGGCCAGTTCAGCGATCAAACTTCCATGATTCAGGAGCAAGTTCATCCCGTGAACCAAAGAAAAAAGAGGCTGCAAAAAGTACAACAGGGAGACGAGCAAAGAGGGCACTGAAAAGGGAAGCTGCTGATAAGGCAGCTGAAGCAAAGCATCAACAGCATTTGCTAAGGTTGGGTAGGAAGTGA 735 0.4558 MSSSLVKIQDEQVLANDLQDLSIKDLREKGSEEEGFGNHGGICAICLDKIVLQETALVKGCEHAYCVTCILRWATYSQNVTCPQCKHPFEFLNVHRSLDGSIQDYMFEESVCLLLRAQWFKPITIVEDHVVHEDTYDEIEDYYQYEEEDDDLDDEVYYGGSSSFRIGNRRWGDNGYVRAGRQEARPVQRSNFHDSGASSSREPKKKEAAKSTTGRRAKRALKREAADKAAEAKHQQHLLRLGRK 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi402g00044 244 SUPERFAMILY RING/U-box 42 92 - -
Sebi402g00044 244 CDD RING-HC_Topors 43 89 - -
Sebi402g00044 244 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 244 - -
Sebi402g00044 244 MobiDBLite consensus disorder prediction 180 244 - -
Sebi402g00044 244 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Sebi402g00044 244 Pfam Ring finger domain 43 86 IPR001841 -
Sebi402g00044 244 ProSiteProfiles Zinc finger RING-type profile. 43 86 IPR001841 -
Sebi402g00044 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 111 IPR013083 -
Sebi402g00044 244 SMART ring_2 43 85 IPR001841 -
Sebi402g00044 244 MobiDBLite consensus disorder prediction 198 237 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi402g00044 3 244 C3H Transcription Factor Family AT5G19430 59.375 5.71e-91 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi402g00044 - - gmx:100777135 355.14