Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi402g00039 ATGAAATTAGAACTTGCTGAAGAGTTAGCATTGACAGAAAAGCAAATATCTGGATGGTTTTGCCACAGAAGGTTAAAAGATAAAAGATTGTTGAAAGATGAAGTATGTGTTAATGGACGACAAGATCGTTCAAGTGGTGTCATCCAGGATCGAGGCAGTGGACTAGGGCAAGATTCATGTGGAAGCACCAAACATGGTGATAATAGGTATCTGGATCCCAAAGAGGTCGAGAGCCATGGTCTCCATAACCATGAATTTTCAGTTGCAGATATGGCCTATGGACATAGGAACCATTTTCCAGAAGATGATAGTGCAACAGATAACACATCATCTGAGAGTAGTTCATCTTTGCAAGAACGATTGTTACCTCAAGGACAGGATCCATTTGATATGGAGCCTTCTAGGTATCTAACACCCAATGGAGCTCTTCCACCTCTAAATCCCAAGAGTGCAATTAACATGGATATAAACCATCAGGATATCTAA 486 0.4053 MKLELAEELALTEKQISGWFCHRRLKDKRLLKDEVCVNGRQDRSSGVIQDRGSGLGQDSCGSTKHGDNRYLDPKEVESHGLHNHEFSVADMAYGHRNHFPEDDSATDNTSSESSSSLQERLLPQGQDPFDMEPSRYLTPNGALPPLNPKSAINMDINHQDI 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi402g00039 161 Pfam Homeodomain 3 29 IPR001356 GO:0003677
Sebi402g00039 161 MobiDBLite consensus disorder prediction 44 71 - -
Sebi402g00039 161 Gene3D - 1 35 - -
Sebi402g00039 161 MobiDBLite consensus disorder prediction 106 122 - -
Sebi402g00039 161 MobiDBLite consensus disorder prediction 92 161 - -
Sebi402g00039 161 SUPERFAMILY Homeodomain-like 2 38 IPR009057 -
Sebi402g00039 161 CDD homeodomain 1 29 IPR001356 GO:0003677
Sebi402g00039 161 ProSiteProfiles 'Homeobox' domain profile. 1 30 IPR001356 GO:0003677
Sebi402g00039 161 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 155 - -
Sebi402g00039 161 MobiDBLite consensus disorder prediction 44 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi402g00039 Sebi-Chr402 710909 711394 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi402g00039 1 82 Homeobox Transcription Factor Family AT4G03250 65.854 6.29e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Sebi402g00039 Homeodomain 1.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi402g00039 - - gmx:100803515 239.965