Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi402g00035 ATGAGTTCGATTATCATGGTGGAGGTTTTGAATTTGAGCGCGGGTGAAGAATTTGAGGTGTTGGAGTGTGCCAATTCGGGGTTCGGGGGATTATTGGGTGAATGGAAGGTTTCGGATATGAGAATGGATGAAAGTGGTCCTGTAGAAAGAGACATTGAGCAGGCTATTACTGCTTTAAAGAAAGGGGCTTACTTGCTGAAGTATGGAAGAAGGGGGAAGCCCAAGTTTTGCCCCTTTCGGCTTTCCAATGATGAATCTGTATTGATATGGTTCTCAGGAAAAGAAGAGAAGCGCCTTAAACTAGCTAATGTTTCTAGAATTATATCTGGACAACGCACACCTATCTTTCAAAGATATCCGCGGCCTGAGAAGGAATATCAGTCATTTTCTCTTATCTACAATGATAGATCACTGGACTTGATTTGCAAGGATAAAGATGAAGCTGAGGTTTGGTTTAGTGGATTAAAAGCACTGATTTCGCGCAGTCATCACCGGAAGTGGAGAACAGAGTCAAGAAGTGATGGTTTTCCATCTGAAGCTAATAGTCCTCGAACATACACCAGAAGAAGTTCTCCCTTAAATTCTCCATTTGGTAGTAATGAAAGCTTGCAGAAGGATAGTGGGGATCATCTTCGCCTTCATAGCCCATATGAAAGCCCCCCTAAGAATGGTTTGGATAAAGCATTTTCTGATGTGATGTACTATCCTATTCCTCCAAAGGGTTTCTTCCCTCCAGATTCCGCCAGTGGTTCAGTCCACTCTGTGTCATCAGGAGGATCAGATAGTATGCATGGCCACATGAAGACAATGCCTATGGATGCTTTTAGAGTTAGTCTATCAAGTGCTGTTAGCTCATCTAGCCAAGGTTCTGGTCATGATGATGGTGATGCCTTAGGGGATGTTTTCATTTGGGGGGAATGCACAGGTGATGGTGTTCTGGGTGGTGGACCTCACCGAGTTGGGAGTTGTCTTGATGTCAAAATGGATTCTCTATTGCCCAAAGCCTTGGAATCGGCAGTGGTTCTTGATGTGCAGAATATTGCTTGCGGTGGGCAACATGCGGCCTTAGTGACCAAACAAGGTGAGATTTTCTCCTGGGGGGAAGAATCAGGAGGCAGGCTTGGGCATGGAGTTGATTCTGATGTTCTTCATCCAAAGCTTATTGAATCTCTAAGTAATACGAATATCGAACTTGTAGCTTGTGGGGAGTATCATACATGCGCTGTGACACTTTCTGGTGATCTTTATACATGGGGTGATGGCACTCACATTTATGGTCTTTTGGGGCATGGAAATCAGGTGAGCCACTGGGTCCCAAAAAGAGTAAATGGCCCCTTGGAGGGCATACACGTTTCATCTATTTCTTGTGGTCCATGGCACACTGCTGTTGTAACCTCTGCTGGGCAATTATTTACTTTTGGTGATGGTACATTTGGTGTTCTGGGTCATGGAGACCGAAAAAGTGTTTCCTTGCCAAAGGAAATAGAGTCCCTGAAGGGTCTTCGTACTGTGCAGGCTGCTTGTGGTGTTTGGCATACTGCTGCAGTTGTGGAAGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCGGGGAAGCTGTTTACTTGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTGACAAGGAAGCCAAACTTGTTCCAACCTGTGTTGTAGCCCTTATTGAACCTAACTTCTGTCAAGTTGCTTGTGGTCATAGTATGACAGTTGCACTTTCTAGATCAGGCCATGTCTATACCATGGGCAGTTGTGTCTATGGCCAGTTAGGAAATCCTCAAGCTGATGGGAAGCTACCAACTCGTGTTGAAGGAAAGCTTTCAAAGAGTTATGTGGAGGAGATAGCTTGTGGTGCATATCATGTTGCGGTTTTAACTTCAAGGACGGAAGTTTACACTTGGGGGAAGGGTGCAAATGGACGTTTAGGCCATGGGGATACTGATGATAGAAACTCCCCAACATTAGTAGAAGCTCTGAAAGACAAACAAGTCAAAAGTATCGCTTGTGGTACAAATTTCACTGCAGCCATATGCCTGCATAAGTGGGTATCTGGTGTTGACCAATCCATGTGTTCTGGCTGCCGTCTGCCATTTAATTTCAAAAGGAAACGCCACAATTGTTATAATTGTGGACTTGTTTTTTGTCATTCATGTAGCAGTAAGAAGTCTATTAAGGCTTCAATGGCACCAAACCCCAACAAACCTTATCGTGTCTGTGATAGTTGTTTTAATAAAATAAGGAAAACTACAGAAACTGATTCTTCATCTCAGTCTTCTATGAGCAGAAGAGGAAGTATTAATCAGGGTTCACTTGAGTTTAATGGCAAGGATGAGAAATTGGATTCCAAATCTCGTAATCAACTTGCCAGGTTCGCTTCAATGGAATCCTTGAAACAAGTGGATAGAAGATCTTCAAAGAAAAATAAGAAATTGGAGTTCAACAGTAGCCGTGTCTCGCCTGTTCCAAATGGAGGTTCACAATCAGGAACAATGAATATTTCTAAATCTTTTAATCCTGTCTTCGGATCATCAAAGAAGTTTTTTTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCCCGGGCAACATCCCCGATATCTAGGCGGCCTAGTCCACCTCGTTCAACTACTCCAACCCCAACGCTGGGAGGACTTACATCCCCAAGGATGGTTGTGGATGATGCTAAGAGGACCAATGATAGCCTCAGTCAGGAGGTTGTTAAATTAAGATCACAGGTGGAAACCTTGACTCGGAAAGCACAACTTCAAGAAATTGAGTTGGAAAGAACAACTAAACAGCTAAAAGAAGCAATAGCAATTGCCAGCGAAGAAACTGCCAAATGCAAAGCAGCAAAGGAAGTGATCAAGTCACTTACTGCCCAGTTGAAGGACATGGCTGAGAGACTTCCTGTAGGAGCAGCCAGGAATGTCAGATCCCCCACTATTACTTCGTTTGGCTCCAATCCTGGTTCCAATGATGTGAGTAATGCATCCGTTGAACGATTGAATATTCAAACAAGAAGCCCAGAATCAGACTTAACTGGATCTAATGACCAGTTGCTTTCAAATGGATCAAGCACTATCACTAACCGTAGTGCAGCTCACAGTAAACATGGTCAATCAGATGCATCTAGCAGAAATGGATGCAAAACAAAGGATAACGAGTCACGTAATGAGACCGAATGGGTTGAGCAAGATGAACCTGGTGTATATATTACTCTCACCTCCCTACCAGGAGATGTAATAGATCTTAAGAGAGTTCGCTTTAGTCGGAAGCGGTTTAGTGAGAAACAAGCAGAACAATGGTGGGCTGAGAATCGGGCGAGAGTATATGAACAGTACAACGTGCGAATGATTGACAAGTCGACCATTGGTGTTGGGAGTGAGGACTTGACTCATTGA 3420 0.4383 MSSIIMVEVLNLSAGEEFEVLECANSGFGGLLGEWKVSDMRMDESGPVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKRLKLANVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSDGFPSEANSPRTYTRRSSPLNSPFGSNESLQKDSGDHLRLHSPYESPPKNGLDKAFSDVMYYPIPPKGFFPPDSASGSVHSVSSGGSDSMHGHMKTMPMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGECTGDGVLGGGPHRVGSCLDVKMDSLLPKALESAVVLDVQNIACGGQHAALVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTHIYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSLPKEIESLKGLRTVQAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVVALIEPNFCQVACGHSMTVALSRSGHVYTMGSCVYGQLGNPQADGKLPTRVEGKLSKSYVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNSPTLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSIKASMAPNPNKPYRVCDSCFNKIRKTTETDSSSQSSMSRRGSINQGSLEFNGKDEKLDSKSRNQLARFASMESLKQVDRRSSKKNKKLEFNSSRVSPVPNGGSQSGTMNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPRMVVDDAKRTNDSLSQEVVKLRSQVETLTRKAQLQEIELERTTKQLKEAIAIASEETAKCKAAKEVIKSLTAQLKDMAERLPVGAARNVRSPTITSFGSNPGSNDVSNASVERLNIQTRSPESDLTGSNDQLLSNGSSTITNRSAAHSKHGQSDASSRNGCKTKDNESRNETEWVEQDEPGVYITLTSLPGDVIDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMIDKSTIGVGSEDLTH 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi402g00035 1139 SUPERFAMILY FYVE/PHD zinc finger 688 759 IPR011011 -
Sebi402g00035 1139 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 636 687 IPR000408 -
Sebi402g00035 1139 SUPERFAMILY PH domain-like 51 159 - -
Sebi402g00035 1139 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 454 464 IPR000408 -
Sebi402g00035 1139 MobiDBLite consensus disorder prediction 803 820 - -
Sebi402g00035 1139 MobiDBLite consensus disorder prediction 1054 1069 - -
Sebi402g00035 1139 FunFam PH, RCC1 and FYVE domains-containing protein 1 522 693 - -
Sebi402g00035 1139 PRINTS Chromosome condensation regulator RCC1 signature 454 470 IPR000408 -
Sebi402g00035 1139 PRINTS Chromosome condensation regulator RCC1 signature 344 357 IPR000408 -
Sebi402g00035 1139 PRINTS Chromosome condensation regulator RCC1 signature 413 429 IPR000408 -
Sebi402g00035 1139 PRINTS Chromosome condensation regulator RCC1 signature 631 652 IPR000408 -
Sebi402g00035 1139 PRINTS Chromosome condensation regulator RCC1 signature 363 379 IPR000408 -
Sebi402g00035 1139 PRINTS Chromosome condensation regulator RCC1 signature 573 591 IPR000408 -
Sebi402g00035 1139 PRINTS Chromosome condensation regulator RCC1 signature 470 484 IPR000408 -
Sebi402g00035 1139 Pfam FYVE zinc finger 688 754 IPR000306 GO:0046872
Sebi402g00035 1139 Coils Coil 947 974 - -
Sebi402g00035 1139 FunFam PH, RCC1 and FYVE domains-containing protein 1 270 521 - -
Sebi402g00035 1139 FunFam Putative E3 ubiquitin-protein ligase HERC1 694 762 - -
Sebi402g00035 1139 Gene3D - 524 699 IPR009091 -
Sebi402g00035 1139 MobiDBLite consensus disorder prediction 821 838 - -
Sebi402g00035 1139 MobiDBLite consensus disorder prediction 757 779 - -
Sebi402g00035 1139 MobiDBLite consensus disorder prediction 757 838 - -
Sebi402g00035 1139 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 584 635 IPR000408 -
Sebi402g00035 1139 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 361 412 IPR000408 -
Sebi402g00035 1139 Pfam Regulator of chromosome condensation (RCC1) repeat 468 516 IPR000408 -
Sebi402g00035 1139 Pfam Regulator of chromosome condensation (RCC1) repeat 531 580 IPR000408 -
Sebi402g00035 1139 Pfam Regulator of chromosome condensation (RCC1) repeat 583 632 IPR000408 -
Sebi402g00035 1139 Pfam Regulator of chromosome condensation (RCC1) repeat 637 684 IPR000408 -
Sebi402g00035 1139 Pfam Regulator of chromosome condensation (RCC1) repeat 361 409 IPR000408 -
Sebi402g00035 1139 Pfam Regulator of chromosome condensation (RCC1) repeat 412 464 IPR000408 -
Sebi402g00035 1139 ProSiteProfiles BRX domain profile. 1066 1121 IPR013591 -
Sebi402g00035 1139 MobiDBLite consensus disorder prediction 1012 1069 - -
Sebi402g00035 1139 Pfam Transcription factor regulating root and shoot growth via Pin3 1065 1120 IPR013591 -
Sebi402g00035 1139 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 347 357 IPR000408 -
Sebi402g00035 1139 Gene3D - 423 523 IPR009091 -
Sebi402g00035 1139 Gene3D - 248 422 IPR009091 -
Sebi402g00035 1139 SUPERFAMILY RCC1/BLIP-II 298 689 IPR009091 -
Sebi402g00035 1139 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 413 467 IPR000408 -
Sebi402g00035 1139 Pfam Unstructured region between BRX_N and BRX domain 990 1059 - -
Sebi402g00035 1139 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 299 360 IPR000408 -
Sebi402g00035 1139 CDD FYVE_like_SF 697 750 - -
Sebi402g00035 1139 Pfam Transcription factor BRX N-terminal domain 949 981 IPR027988 -
Sebi402g00035 1139 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 692 754 IPR017455 -
Sebi402g00035 1139 SMART fyve_4 686 755 IPR000306 GO:0046872
Sebi402g00035 1139 CDD PH_PLC_plant-like 50 160 - -
Sebi402g00035 1139 MobiDBLite consensus disorder prediction 866 896 - -
Sebi402g00035 1139 Pfam Pleckstrin homology domain 53 159 IPR001849 -
Sebi402g00035 1139 Coils Coil 898 939 - -
Sebi402g00035 1139 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 532 583 IPR000408 -
Sebi402g00035 1139 MobiDBLite consensus disorder prediction 174 204 - -
Sebi402g00035 1139 MobiDBLite consensus disorder prediction 169 223 - -
Sebi402g00035 1139 MobiDBLite consensus disorder prediction 1012 1053 - -
Sebi402g00035 1139 Gene3D - 51 168 IPR011993 -
Sebi402g00035 1139 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 468 519 IPR000408 -
Sebi402g00035 1139 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 95 973 - -
Sebi402g00035 1139 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 506 516 IPR000408 -
Sebi402g00035 1139 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 700 761 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi402g00035 Sebi-Chr402 645444 655811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi402g00035 958 1130 Major Intrinsic Protein MIP AT1G31880 32.787 2.26e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi402g00035 - - gmx:100791947 1941.01