Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi402g00023 ATGACGAGTGCTATTTTCAGAAGGTCTTCTTCCACATTCTCACGCCGTTTCTTCGCCGCCGTCACCTCCGTCAAGCCGCTTCCTCACTTCCACCACCGCCTCGGCGCCGTCCCTCTCCGGAACGGTGTCTCCAGCGAAGGAGCCAGGGCCTTTCACGCGAAATCTGGACCGTTGAACTTCCACTCGTCTCTGGTTTCTCGTGCCGCGCTAAATGCCTTGGACCACGATTACGTGCACGACGATGAAGGTTCTAGTCCGAACGGCGACGAAGGTCTCGAGATCGCGAAGCTCGGGATCTCTCAGGACATCGTGGATGCTCTGGCCAAGAAAGGGATCGCGAAGCTCTTCCCCATTCAGAGAGCTGTATTGGAACCTGCGATGCAAGGGCGTGATATGATTGGTCGAGCTAGAACCGGAACTGGGAAAACTCTAGCTTTTGGGATACCTATCCTGGATAGGATTATTCAGTTTAATGCTAAGCATGGGCGAGGAAGGGACCCTTTGGCTTTGGTTTTGGCTCCTACCAGAGAACTTGCGCGGCAGGTTGAAAAGGAATTCAACGAGGCTGCACCCAACTTGGACACAATTTGTCTTTATGGGGGTATGCCCATTAGTCAACAAATGAGGCAGCTTGATTATGGTGTAGATATTGCAGTTGGCACACCTGGTCGAATTATTGACCTTCTCAACAGGGGTTCACTGAATTTGAAGGATGTTCAGTTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTAGGATTTCAAGAAGAAGTGGAGAAGATCTTGGAGAGGTTGCCTCCAAAGCGTCAGACTCTTATGTTCTCAGCAACAATGCCATCTTGGATAAAGAATATTACCCGCAATTACCTAAACAACCCCCTAACCATTGATCTTGTTGGAGATTCTGATCAGAAGCTGGCAGATGGAATTTCACTGTACTCTATTGCATCTGATATGTATACTAAAGCGGGAATCCTTGCACCTCTAGTAACAGAACATGCAAAAGGAGGAAAGTGTATTGTTTTCACTCAAACCAAACGTGATGCTGATCGATTATCATATATGATCGCAAAAAGCCTTAAATGTGAAGCCTTGCATGGAGATATTTCACAAGCTCAGAGGGAAAGAACTCTTGCTGGCTTCAGAAACAACCATTTTAATGTTTTAGTGGCAACTGATGTTGCTTCACGTGGGCTTGATATTCCTAATGTTGATCTCGTAATACATTATGATCTTCCCAATTCTTCAGAGATATTTGTTCATCGATCTGGACGAACAGGACGTGCTGGAAAGAAAGGAACTGCCATTCTTGTTTACACAGAAGATCAATTCAGGGCTGTAAGGAGTATTGAGCGCGATGTTGGATGTAGATTTACGGAGCTACCAAAGATTGAGGTTGAAAGTGGATCAGCAGACATGTTTGGTCACATGAGTAGTGGCCGATTTGCCCCTTCAGGAGGTATGCGAGATCGTCGATCTGGTGGTACAGGTTTTGGTGGTGGTTCTCGATTTGGCCGTTCTGGGAGTTACAGTAACCCTGGATTTGGCCGAACTGGCTATGGGAATTCTGGTGAGGTGGGAAGGTTTGGTGGATCATCTTCTAGTCGTTTTGGTGGCCCAGGTTCGAGTCAGTTAGGAGGGGGGTTTTCTGGTAATTCTTCTGGTGAAATGGGTAAATATGGTGGACCAAGCTCCGGTCGTTACGGTTCCTCTGGTGGCTTTGGTTCAGGTCAACCAGAAACTCAATCTGGTGGCTCTCGCCCAGGTGGTTTTGGCGGATTTGGTAGTTCAGGTCGTTCCAGCGACTTTGGATATTTTGGCTCAGGTCAATCTGGTGCATTTGGTGACAGAAATTGA 1860 0.4737 MTSAIFRRSSSTFSRRFFAAVTSVKPLPHFHHRLGAVPLRNGVSSEGARAFHAKSGPLNFHSSLVSRAALNALDHDYVHDDEGSSPNGDEGLEIAKLGISQDIVDALAKKGIAKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDRIIQFNAKHGRGRDPLALVLAPTRELARQVEKEFNEAAPNLDTICLYGGMPISQQMRQLDYGVDIAVGTPGRIIDLLNRGSLNLKDVQFVVLDEADQMLQVGFQEEVEKILERLPPKRQTLMFSATMPSWIKNITRNYLNNPLTIDLVGDSDQKLADGISLYSIASDMYTKAGILAPLVTEHAKGGKCIVFTQTKRDADRLSYMIAKSLKCEALHGDISQAQRERTLAGFRNNHFNVLVATDVASRGLDIPNVDLVIHYDLPNSSEIFVHRSGRTGRAGKKGTAILVYTEDQFRAVRSIERDVGCRFTELPKIEVESGSADMFGHMSSGRFAPSGGMRDRRSGGTGFGGGSRFGRSGSYSNPGFGRTGYGNSGEVGRFGGSSSSRFGGPGSSQLGGGFSGNSSGEMGKYGGPSSGRYGSSGGFGSGQPETQSGGSRPGGFGGFGSSGRSSDFGYFGSGQSGAFGDRN 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi402g00023 619 CDD SF2_C_DEAD 323 440 - -
Sebi402g00023 619 Gene3D - 93 301 IPR027417 -
Sebi402g00023 619 Pfam DEAD/DEAH box helicase 116 285 IPR011545 GO:0003676|GO:0005524
Sebi402g00023 619 CDD DEADc 103 298 - -
Sebi402g00023 619 Gene3D - 312 475 IPR027417 -
Sebi402g00023 619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 452 IPR027417 -
Sebi402g00023 619 SMART ultradead3 111 314 IPR014001 -
Sebi402g00023 619 MobiDBLite consensus disorder prediction 528 552 - -
Sebi402g00023 619 FunFam ATP-dependent RNA helicase RhlE 83 300 - -
Sebi402g00023 619 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 326 470 IPR001650 -
Sebi402g00023 619 MobiDBLite consensus disorder prediction 482 619 - -
Sebi402g00023 619 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 93 464 - -
Sebi402g00023 619 MobiDBLite consensus disorder prediction 570 586 - -
Sebi402g00023 619 Pfam Helicase conserved C-terminal domain 326 431 IPR001650 -
Sebi402g00023 619 SMART helicmild6 351 431 IPR001650 -
Sebi402g00023 619 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 123 297 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi402g00023 Sebi-Chr402 460361 466360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi402g00023 97 463 Eukaryotic Initiation Factors Gene Family AT3G19760 33.693 1.05e-67 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi402g00023 - - gmx:100802553 833.943