Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi402g00011 ATGAACAACAGTGTTCCTGATTGGAATTTTGGGAGTGATACCTGTGTCACCAATCAAAAGAAGCCCATGGGGCAGGACCATGAACTTGTGGAGCTCCTATGGCAAAATGGCCAAGTAGTATTGCACAGCCAAACACATAGGAAACCAGTTGTGAATTCAATCCCCTCAAGACAGGTTCAGAAAAATTTTCAATCAACATTAAGGACTAGTGAGCCATTTGGGAACTCAAGTAACTTGATTCAAGATGATGAGACAGTATCATGGATCCAATACCCTCTTGAGGATCCTTTGGAACAAGAATTATGTTCAAACCTTTTATCTGAACTACCACCCTGTGAAGTTGAGTCTTATAAGCAATTCAAGCAGTTTGAAGAGGGAAAGTTTTCCAAATTGGATGCTTCTAGTGCTCCCCATGTGACTGAATTCTCAGGAATTCCTATGCCTGCTCCAAGATTTCATGTTTCTGATTCATCTCAGAAAAACAATGACTTGGGTGGATCACGCAAGGTCCTAAACTTTTCTCACTTTTCAGCACTCCCTAATGTTTCTTCAGCATCTGGTAATCCACATTTTAGAGACAAAATCACTGGTAATCTTTCAAAAGGTGAGATTAGAGAGTGCTCAGTGATGACAGTTGGTTCAAGTTTTTGTGGCAGTAATCACATCCCTCAAGATCCAGATGTAAGCAGGGCTTCAAGCAATGGTGTTTGGACTACTAATTTATCTGCTGAGCCTGAAGCTGTGAGAGATGATGTCCAGAGAACAAATCCTCAGAGTGAGAAAGGGAAACCAGAGATGCTTGAACCAACTGTCACTTCATCTTCTGGTGGCTCAGGTAGTAGTCTTGGAAAAACTTGTTCCTTATCTACAAGAAACCAGGGCCAAAAAAGGAAAGGAATAGATGTGGAAGAATCAGAAGAACAAAGTGAGGACACAGAACTCAAATCAGCTGTTGGAAATAAGGGATCTCAGAGATCAGGGTCAGCCAGAAGGAACCGTGCTGCTGAAGTGCATAATCTTTCAGAAAGGAGAAGAAGAGATAGGATCAATGAGAAGATGAGGGCATTGCAACAACTCATACCTCACAGTAGCAAGACAGACAAAGCATCAATGTTAGAAGAGGCAATTGAATACTTGAAATCACTTCAATTACAACTTCAGGTAATGTGGATGGGATCTGGCATGGCACCAATGATGTTTCCAGGAATTCAGCACTATATGTCACAAATGGGCATGGGAATGGCTACACCTTTTCCTCCTGTTCACAATCCTATGCAATTACCAAGAGTGCCACTTGATCAGTCCATGTCTGCTTCACAGTCACCAAACCAGACATTAATGTCCCAACCTCCTATTTTAGGTGCCTTTAATTACCAAAATCAGATACAAAATCCAGCTCTTTCAGAGCAATATGCTCGTTACATGGGCTATCATCTTATGCAAAATGCCTCTCAGCCAATGAATATGTACAGATATGGTCCCCAGTCAGTACAACATGGTCAAACAATGATGCCACCCAGCAATAGCAGTGGAGCAGCTAATATTGATGATACTGTGAGTGGCAAAATGGGTTAA 1575 0.4171 MNNSVPDWNFGSDTCVTNQKKPMGQDHELVELLWQNGQVVLHSQTHRKPVVNSIPSRQVQKNFQSTLRTSEPFGNSSNLIQDDETVSWIQYPLEDPLEQELCSNLLSELPPCEVESYKQFKQFEEGKFSKLDASSAPHVTEFSGIPMPAPRFHVSDSSQKNNDLGGSRKVLNFSHFSALPNVSSASGNPHFRDKITGNLSKGEIRECSVMTVGSSFCGSNHIPQDPDVSRASSNGVWTTNLSAEPEAVRDDVQRTNPQSEKGKPEMLEPTVTSSSGGSGSSLGKTCSLSTRNQGQKRKGIDVEESEEQSEDTELKSAVGNKGSQRSGSARRNRAAEVHNLSERRRRDRINEKMRALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQVMWMGSGMAPMMFPGIQHYMSQMGMGMATPFPPVHNPMQLPRVPLDQSMSASQSPNQTLMSQPPILGAFNYQNQIQNPALSEQYARYMGYHLMQNASQPMNMYRYGPQSVQHGQTMMPPSNSSGAANIDDTVSGKMG 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi402g00011 524 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 331 397 IPR036638 GO:0046983
Sebi402g00011 524 MobiDBLite consensus disorder prediction 241 348 - -
Sebi402g00011 524 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 333 382 IPR011598 GO:0046983
Sebi402g00011 524 FunFam Basic helix-loop-helix transcription factor 328 391 - -
Sebi402g00011 524 CDD bHLH_AtPIF_like 333 396 IPR047265 -
Sebi402g00011 524 Pfam Helix-loop-helix DNA-binding domain 337 383 IPR011598 GO:0046983
Sebi402g00011 524 PANTHER TRANSCRIPTION FACTOR PIF3 17 492 IPR044273 GO:0003700|GO:0006355
Sebi402g00011 524 MobiDBLite consensus disorder prediction 315 330 - -
Sebi402g00011 524 Gene3D - 328 389 IPR036638 GO:0046983
Sebi402g00011 524 MobiDBLite consensus disorder prediction 505 524 - -
Sebi402g00011 524 SMART finulus 339 388 IPR011598 GO:0046983
Sebi402g00011 524 MobiDBLite consensus disorder prediction 331 348 - -
Sebi402g00011 524 MobiDBLite consensus disorder prediction 268 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi402g00011 Sebi-Chr402 173898 176851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi402g00011 1 524 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 34.791 2.43e-56 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi402g00011 HLH 4.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi402g00011 K16189 - gmx:100784531 875.544