Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi401g00018 ATGCTTCCCTCTTCAACAGGCTCTTCATGGGTGATTCCACCAACCAAGGTTCAAATTTTCTCTCTGCAGACAAATCCATTTCCCTCACCCACCCAAAACCCACCTCCAAATTTGCCTACTTTGTATCACACTGCAAGAGTTTTCACCAGCACAGGGAGCTACAGGTTCAGCATGAGGAAAAACGATTATGGAGCTAGGTTGGTTGGTCCTTCTGGTGTTGAGGAGTACAAGAACCTTTCATCCCCAGGATCAGCTAAGGCTTCAGTGAGCACTCACACACCAAATTACCAGAAGGGTGGTGCAAGTAAAGAGATCGCGCCTGATAATGTTTATATGACTGCTCAAGAGATGAATAGGGATCATTCTAGTTTAGCTTCACAATTCAACATAACCTGGAATTTTCCAGTGGCACCTGGTGGTGTTAGACACTTGTCTATGTGGATTTGTTTGGCAGATTCTGATGATTCAGGTGTTATTCAAATAAGTGTTGGCCCTTCTGATCTTAGCAGGAAGAAAAACCCAAAAACAAAGGACAATGGAAGAAGTGTAGGATGGACGCCTTTGCGTGTGTTTGGAGGAAGTTCACTTAGTAGAATGTCTGAAGGGACAGCTTTTCCATCTCCTGGATATTTTGGTTTGAGAATCCCTTTTGCTGATATACAATCAGCAACAAACAATTTGATTAGAAGTCTAATTATAGGCGAGAGGTCTCCACTATCTTCACACTGGTTTTGCACAAGGATCATCCACCGTGACATTAAATCAACCAATATTCTGCTTGATGAAAATATGTTGCCAAGGTTGCTGATTTTTGGTCTTTCAAGATCTGGGCCTTGTATGAATGAAACCCATGTGAGTACTGGTGTGAAAGGTAGTTTTGGTTATCTTGATCCTGAGTATTTCCGAAGGCAGCAGCTTACAGATAAATCAGATGTTTATTCATTTGGGGTTGTGCTTTTTGAGGTTCTTTGTGCCAGATCTGCTGTTGATCCACAACTTGATAGGGAACAGGTGAATTTAGCAGAATGGGCACTTGAATGGCAGAAGAAGGACATGCTGGAGCATATTATTGATCCTTATCTTGTTGGGCAGATCAAGCAAAGCTCATTGAAGAAATTTGGTGAAACAGCAGAGAAATGTTTGGCTGAATATGGTGTTGACAGGCCAACAATGGGTGATGTATTATGGAATTTGGAATATTCACTTCAGCTCCAAGAAAGTGAGTCATATTCTGATAGTGGTGCTCATGGAGCAGTGAATGTGACAACTACAATAATTCCTGGGAATTCTTCTGGCAACATAAGAGCAGAGGGAGATTATGACAATAATTATTCAAACATAGGTGGTACCCAAGTTTTTTCCCAACTAATGACCAATGAAGGAAGATAG 1389 0.4154 MLPSSTGSSWVIPPTKVQIFSLQTNPFPSPTQNPPPNLPTLYHTARVFTSTGSYRFSMRKNDYGARLVGPSGVEEYKNLSSPGSAKASVSTHTPNYQKGGASKEIAPDNVYMTAQEMNRDHSSLASQFNITWNFPVAPGGVRHLSMWICLADSDDSGVIQISVGPSDLSRKKNPKTKDNGRSVGWTPLRVFGGSSLSRMSEGTAFPSPGYFGLRIPFADIQSATNNLIRSLIIGERSPLSSHWFCTRIIHRDIKSTNILLDENMLPRLLIFGLSRSGPCMNETHVSTGVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARSAVDPQLDREQVNLAEWALEWQKKDMLEHIIDPYLVGQIKQSSLKKFGETAEKCLAEYGVDRPTMGDVLWNLEYSLQLQESESYSDSGAHGAVNVTTTIIPGNSSGNIRAEGDYDNNYSNIGGTQVFSQLMTNEGR 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi401g00018 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672|GO:0006468
Sebi401g00018 462 Gene3D Transferase(Phosphotransferase) domain 1 238 405 - -
Sebi401g00018 462 SUPERFAMILY Protein kinase-like (PK-like) 247 396 IPR011009 -
Sebi401g00018 462 SMART serkin_6 73 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi401g00018 462 PANTHER OS07G0166700 PROTEIN 247 405 IPR045272 GO:0004714|GO:0006468
Sebi401g00018 462 MobiDBLite consensus disorder prediction 79 98 - -
Sebi401g00018 462 MobiDBLite consensus disorder prediction 79 102 - -
Sebi401g00018 462 ProSiteProfiles Protein kinase domain profile. 76 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi401g00018 462 Pfam Protein tyrosine and serine/threonine kinase 247 395 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi401g00018 Sebi-Chr401 713374 715748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi401g00018 248 462 Receptor kinase-like Gene Family AT5G59700 59.130 5.73e-83 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Sebi401g00018 PK_Tyr_Ser-Thr 4.2e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi401g00018 - - gmx:100814974 363.999