Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi400g00054 ATGGAGGAGGGGCGAAAATATGGCATTCACAAGAAGGCTTGTAAGTTATCAACACTTTGTGGGGCTAGGGTTGATATACTCATATTTTCTCCATGTGGAAGATCATTCTGTTATGGGGATCCTTCTCTCCGATTGTTGACAAGGACAATTGTAGATGATGAACACCCTTTAGAAGGTGTCAACTGTGACCAACTTGTAGAGGATCACAAGAGATCGGAGATCGACGAACTCAACAAAAAACATGATGCACTTCAAGATCAATTGCATGGTGAGAAAGCACGCGAGAAAAATCTAAAGGACATATTGAAGCAGAGGAAAAACGATGGCTGGTGGGAGGCCAAAGTGCAAGCACTTAGTTGTGAACATGCTGAGGAAATGGAAGCAAGTCTTTTAGAATTACATGAAAAATTGTCAAATGAACTTTCAATCAAGTGTGGAGGAAATGCTTCTCATGGAGAAGACTCATTTGTTGTTGTCTCTCCTCCAAGCCAAGGAGATGATCCATTTCTACACAACACAAGTAATGAGAATGCTGATGAAAGTGACAATCATGCTCTTATTACCTTCTCCCCATCAAATCAACAGTAA 588 0.4082 MEEGRKYGIHKKACKLSTLCGARVDILIFSPCGRSFCYGDPSLRLLTRTIVDDEHPLEGVNCDQLVEDHKRSEIDELNKKHDALQDQLHGEKAREKNLKDILKQRKNDGWWEAKVQALSCEHAEEMEASLLELHEKLSNELSIKCGGNASHGEDSFVVVSPPSQGDDPFLHNTSNENADESDNHALITFSPSNQQ 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi400g00054 195 Gene3D - 3 57 IPR036879 GO:0003677|GO:0046983
Sebi400g00054 195 PRINTS MADS domain signature 19 40 IPR002100 GO:0003677|GO:0046983
Sebi400g00054 195 PRINTS MADS domain signature 4 19 IPR002100 GO:0003677|GO:0046983
Sebi400g00054 195 SUPERFAMILY SRF-like 5 52 IPR036879 GO:0003677|GO:0046983
Sebi400g00054 195 MobiDBLite consensus disorder prediction 153 183 - -
Sebi400g00054 195 MobiDBLite consensus disorder prediction 166 183 - -
Sebi400g00054 195 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 5 36 IPR002100 GO:0003677|GO:0046983
Sebi400g00054 195 Coils Coil 120 140 - -
Sebi400g00054 195 Coils Coil 67 94 - -
Sebi400g00054 195 ProSiteProfiles MADS-box domain profile. 5 42 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi400g00054 Sebi-Chr400 882710 883588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi400g00054 5 142 Type I MADS-box Gene Family AT5G60440 34.286 2.38e-17 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi400g00054 SRF-TF 4.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi400g00054 - K12412 gmx:102665718 146.362