Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi400g00052 ATGTTATCTCTAAAGATTAGTTTGACTGTAGCAGTCACAGTCCTTTCAATTGTAGCCTTAGTTTCATGTGCTAAAACAAGCTTGGATGTTGAAATTGAAGCTTTGAAAGCTTTCAAGAATTCCATCACCACTGACCCAACTGGAGTTCTTGCAAATTGGGTTGACAGCCACCATCACTGCAACTGGTCTGGCATTGCATGTGACAAATCATTAAATCATGTTATTTCAATTTCTCTGGCTGGTCTTCAGCTCCAAGGGGAGATTTCACCATTCCTGGGAAACATTTCAGGCCTTCAGGTTCTTGATTTAAGTTCAAATTCATTTACTGGGTATATTCCTGCTCAGCTCAGTCTTTGCACTCAACTTTCTGAACTATATCTTGTTGAAAATTCTCTCTCAGGCCCAATCCCTCCTGCATTAGGAAACCTGAAGAGCATTCAGTATTTGGATTTAGGTACTAACTTGTTGAATGGAAGCCTCCCTGAAAGCATATTCAACTGCACTTCTTTGTTGGGTATTGCTTTCAATTTCAACAACCTTACTGGCATAATCCCATCAAACATAGGGAATCTAGTTAACCTTACACAAATTGAAGGATTTGGGAATAACTTTGTTGGGTCTATACCTCTTTCCATAGGTCAGTTGGGAGCTTTGCAATCTCTTGATTTTAGCCAAAACCAGTTATCAGGTGTAATACCTAGAGAGATTGGAAATCTGACAAATTTAGAAAACCTTTTGTTGTTCCAAAATTCCTTGACAGGGAAAATCCCTTCTGAGCTTGCTCAGTGCAAGAAGCTTTTATACCTTGAGTTATATGAAAATCATTTCATTGGGAGTATCCCTCCTGAGCTAGGAAATTTAGTTCAATTGGAGACATTGAGGTTATATGGCAATAACTTAAATTCCACAATCCCATCTTCCATATTTCAGTTGAAATCATTGACACATTTAGGACTCTCAGAGAATAACTTAGAAGGAACAATATCTGCTGAGATTGGATCTCTGAGTTCCTTACAAGTGCTAACCCTGCATTTAAATAAGTTTACTGGGCAGATCCCTTCATCAATAACAAACTTGACAAACTTGACATATCTGTCAATGAGCCAGAATTTCCTTTCTGGTGAACTTCCTTCAAACCTGGGTGTGCTTCATAACTTGAAGATTCTTGTCTTGAACTACAATGCTTTGCATGGATCCATTCCCCCTAGCATTACCAATTGTACTAGTTTGGTAAATGTGAGTTTATCATTTAATGCTTTAACTGGGGAAATTCCTGAGGGTTTTTCAAGGATGCCTAATCTTACTTTCCTGTCTCTTGCATCCAACAAAATGACTGGGAAAATCCCAGATGACCTCTTCAACTGCTCAAATCTTAGTACTCTGAGTTTGGGGAAGAACAACTTCAGTGGATTGATAAAACCTGGTATCCAGAACCTGTTTAAACTCATGCGTTTGCAGCTGAATGCAAATTCTTTCATAGGGCCAATTCCACCTGAGATTGGAAACTTGAACCAACTCATCACTTTGTCCCTTTCTGAAAATAGATTTTCAGGTCAAATTCCACCAGAACTGTCCAAACTTTCTCTCCTTCAGGGACTCCATCTCCATGACAATGTATTAGAAGGTACAATACCTGATAAACTCTCTGAATTAAAACGACTAACTGAACTTCTGCTGCATCAGAACAAGTTGGTTGGTCAAATACCAGATTCTATCTCAAAGCTTGAGATGCTTTCATACTTGGACCTCCATAGCAACAAACTTAATGGGTCCATTCCAAGAAGCATGGGGCAGCTTAATCATCTTTTGATGTTGGATCTCTCTCACAACCACCTCACAGGATCAATTCCCGGAGATGTCATTGCACACTTCAAAGACATGCAGATGTATCTTAACCTTTCTTACAACCACTTGGTTGGAAGTGTTCCAACTGAGCTGGGAATGTTGGAAATGACACAAGCCATTGATATTTCAAACAATAACCTTTCAGGTTTCCTTCCCAAGACACTTGCTGGGTGCAGAAATCTGTTCAGTCTTGACTTTTCAGGAAACAATATTTCAGGTCCTATTCCTGCAGAAGCTTTTAGTCACATGGACTTGCTTCAAAGCTTGAACCTTTCAAGAAATCATTTAGAAGGTGAAATTCCTGAAAACTTGGCAGAGCTTAAGAATCTTAGTTCCCTAGATCTTTCTCAGAATAACTTGAAGGGAACTATTCCTCAGGGCTTTGCCAATCTTTCCAACCTCATGCATCTCAACCTTTCTTTCAATCAACTTGAAGGTCCTGTGCCTATGACTGGAATATTTGCAAATATCAATGCATCTAGTATGATGGGAAACCAGGCTCTTTGTGGAGCAAAATTCCTACATCCTTGCAGAGAGAGTCATCACCATTCACTATCCAAGAAGGGCATAACTATCATTGCTGCATTGGGATCTCTTGCTGTACTTCTACTTCTAGTGTTTGTGATTTTAATTCTCAATCGAGGCACCAAATTCAGCAATTCTATAGAAAGTGATAATGGTGAGAAATATGGACCAAAGTACAGTTCAGCATTGGCTCTTAAAAGATTCAATCCAAAGGAGTTAGAAGATGCCACTGGTTTTTTCAGCACTGAGAACATCCTTGGTGCTAGCAGTTTGAGCACAGTTTACAAGGGTCAACTGGAAGATGGCCAGATTGTAGCCATCAAAAGATTGAATTTGCACCAATTCTCTGCAAATACTGACAAGATCTTCAAGACAGAAGCCAGTACCTTGAGCCAGTTGAGACACAGGAATTTGGTTAAGGTACTTGGATATGCATGGGAGAGTGGGAAAATGAAGGCTTTAGTTCTACAATACATGGAGAATGGGAATTTGGATAGCATCATACATGACAAAAGGGTAGATAAGTCTAGGTGGACATTATCTGAAAGACTCCGAGTTCTCATTTCTATTGCTAGTGGATTGGATTACTTGCACTCTGGATATGATTTTCCCATTGTACACTGTGATTTAAAGCCTTCTAACATCCTTTTAGATATAGACTGTGAAGCTCATGTCAGTGATTTTGGGACAGCTAGAATACTTGGTCTTCATCTGCAGGATGGTAGTACCCTTTCCTCATCAGCAGCTTTGCAAGGCACAGTTGGCTATTTGGCACCAGAATTTGCCTACATGAGGAAAGTAACGACCAAAGTGGATGTGTTCAGCTTTGGTATCATAGTAATGGAGTTTCTAACAAAAAGAAGGCCAACAGGGCTCTCAGAAGAGGATGGCTTGCCAATCAGTTTGCGTGAAGTAGTGGCAAAAGCACTTGCAAATGGAATGGAACAGCTTGTCAATATTGTGGACCCTATGTTAACTAAGAATGTCACAGAAGACCATGTGGAAGTATTGGCAGAGCTCTTTAAGCTATCCTTGTGCTGTACCCTCCCAGATCCTGAAGAACGACCAGACATGAATGGGGTGTTATCTGCCCTTATGAAGCTTAAAACAGCAATATAG 3489 0.3998 MLSLKISLTVAVTVLSIVALVSCAKTSLDVEIEALKAFKNSITTDPTGVLANWVDSHHHCNWSGIACDKSLNHVISISLAGLQLQGEISPFLGNISGLQVLDLSSNSFTGYIPAQLSLCTQLSELYLVENSLSGPIPPALGNLKSIQYLDLGTNLLNGSLPESIFNCTSLLGIAFNFNNLTGIIPSNIGNLVNLTQIEGFGNNFVGSIPLSIGQLGALQSLDFSQNQLSGVIPREIGNLTNLENLLLFQNSLTGKIPSELAQCKKLLYLELYENHFIGSIPPELGNLVQLETLRLYGNNLNSTIPSSIFQLKSLTHLGLSENNLEGTISAEIGSLSSLQVLTLHLNKFTGQIPSSITNLTNLTYLSMSQNFLSGELPSNLGVLHNLKILVLNYNALHGSIPPSITNCTSLVNVSLSFNALTGEIPEGFSRMPNLTFLSLASNKMTGKIPDDLFNCSNLSTLSLGKNNFSGLIKPGIQNLFKLMRLQLNANSFIGPIPPEIGNLNQLITLSLSENRFSGQIPPELSKLSLLQGLHLHDNVLEGTIPDKLSELKRLTELLLHQNKLVGQIPDSISKLEMLSYLDLHSNKLNGSIPRSMGQLNHLLMLDLSHNHLTGSIPGDVIAHFKDMQMYLNLSYNHLVGSVPTELGMLEMTQAIDISNNNLSGFLPKTLAGCRNLFSLDFSGNNISGPIPAEAFSHMDLLQSLNLSRNHLEGEIPENLAELKNLSSLDLSQNNLKGTIPQGFANLSNLMHLNLSFNQLEGPVPMTGIFANINASSMMGNQALCGAKFLHPCRESHHHSLSKKGITIIAALGSLAVLLLLVFVILILNRGTKFSNSIESDNGEKYGPKYSSALALKRFNPKELEDATGFFSTENILGASSLSTVYKGQLEDGQIVAIKRLNLHQFSANTDKIFKTEASTLSQLRHRNLVKVLGYAWESGKMKALVLQYMENGNLDSIIHDKRVDKSRWTLSERLRVLISIASGLDYLHSGYDFPIVHCDLKPSNILLDIDCEAHVSDFGTARILGLHLQDGSTLSSSAALQGTVGYLAPEFAYMRKVTTKVDVFSFGIIVMEFLTKRRPTGLSEEDGLPISLREVVAKALANGMEQLVNIVDPMLTKNVTEDHVEVLAELFKLSLCCTLPDPEERPDMNGVLSALMKLKTAI 1162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi400g00052 1162 SMART LRR_sd22_2 215 241 - -
Sebi400g00052 1162 SMART LRR_sd22_2 551 574 - -
Sebi400g00052 1162 SMART LRR_sd22_2 722 748 - -
Sebi400g00052 1162 SMART LRR_sd22_2 383 415 - -
Sebi400g00052 1162 SMART LRR_sd22_2 119 151 - -
Sebi400g00052 1162 SMART LRR_sd22_2 359 382 - -
Sebi400g00052 1162 Gene3D Ribonuclease Inhibitor 625 801 IPR032675 -
Sebi400g00052 1162 Gene3D Ribonuclease Inhibitor 262 424 IPR032675 -
Sebi400g00052 1162 CDD STKc_IRAK 876 1158 - -
Sebi400g00052 1162 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 28 182 - -
Sebi400g00052 1162 Gene3D Transferase(Phosphotransferase) domain 1 949 1161 - -
Sebi400g00052 1162 PRINTS Leucine-rich repeat signature 602 615 - -
Sebi400g00052 1162 PRINTS Leucine-rich repeat signature 722 735 - -
Sebi400g00052 1162 SUPERFAMILY L domain-like 31 305 - -
Sebi400g00052 1162 Gene3D Phosphorylase Kinase; domain 1 834 948 - -
Sebi400g00052 1162 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 433 1156 - -
Sebi400g00052 1162 ProSitePatterns Serine/Threonine protein kinases active-site signature. 995 1007 IPR008271 GO:0004672|GO:0006468
Sebi400g00052 1162 SMART serkin_6 870 1159 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi400g00052 1162 Pfam Leucine rich repeat 553 612 IPR001611 GO:0005515
Sebi400g00052 1162 Pfam Leucine rich repeat 654 711 IPR001611 GO:0005515
Sebi400g00052 1162 Pfam Leucine rich repeat 409 468 IPR001611 GO:0005515
Sebi400g00052 1162 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 830 948 - -
Sebi400g00052 1162 FunFam MDIS1-interacting receptor like kinase 2 isoform A 183 283 - -
Sebi400g00052 1162 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 378 472 - -
Sebi400g00052 1162 SUPERFAMILY L domain-like 202 494 - -
Sebi400g00052 1162 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 949 1162 - -
Sebi400g00052 1162 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 521 619 - -
Sebi400g00052 1162 Pfam Leucine rich repeat N-terminal domain 31 68 IPR013210 -
Sebi400g00052 1162 Gene3D Ribonuclease Inhibitor 28 187 IPR032675 -
Sebi400g00052 1162 Gene3D Ribonuclease Inhibitor 425 518 IPR032675 -
Sebi400g00052 1162 Gene3D Ribonuclease Inhibitor 519 624 IPR032675 -
Sebi400g00052 1162 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Sebi400g00052 1162 SMART LRR_typ_2 215 238 IPR003591 -
Sebi400g00052 1162 SMART LRR_typ_2 722 745 IPR003591 -
Sebi400g00052 1162 SMART LRR_typ_2 503 527 IPR003591 -
Sebi400g00052 1162 SMART LRR_typ_2 95 119 IPR003591 -
Sebi400g00052 1162 SMART LRR_typ_2 698 721 IPR003591 -
Sebi400g00052 1162 SMART LRR_typ_2 383 407 IPR003591 -
Sebi400g00052 1162 SMART LRR_typ_2 287 311 IPR003591 -
Sebi400g00052 1162 SMART LRR_typ_2 673 697 IPR003591 -
Sebi400g00052 1162 SMART LRR_typ_2 746 771 IPR003591 -
Sebi400g00052 1162 SMART LRR_typ_2 599 623 IPR003591 -
Sebi400g00052 1162 SMART LRR_typ_2 551 575 IPR003591 -
Sebi400g00052 1162 SMART LRR_typ_2 431 455 IPR003591 -
Sebi400g00052 1162 SMART LRR_typ_2 239 263 IPR003591 -
Sebi400g00052 1162 SMART LRR_typ_2 143 167 IPR003591 -
Sebi400g00052 1162 SMART LRR_typ_2 335 359 IPR003591 -
Sebi400g00052 1162 Gene3D Ribonuclease Inhibitor 190 261 IPR032675 -
Sebi400g00052 1162 ProSiteProfiles Protein kinase domain profile. 870 1158 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi400g00052 1162 SUPERFAMILY L domain-like 474 801 - -
Sebi400g00052 1162 FunFam Piriformospora indica-insensitive protein 2 284 377 - -
Sebi400g00052 1162 SUPERFAMILY Protein kinase-like (PK-like) 847 1155 IPR011009 -
Sebi400g00052 1162 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 620 796 - -
Sebi400g00052 1162 Pfam Protein kinase domain 871 1151 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi400g00052 Sebi-Chr400 811816 815844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi400g00052 21 1159 Receptor kinase-like Gene Family AT5G46330 55.769 0.0 1184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Sebi400g00052 Pkinase 5.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi400g00052 K13420 - gmx:100817960 1873.21