Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi400g00045 ATGGATGAGCCTCTGCTCCCATATGGCAGCCCCAGAACGAAGCCTCCGCCATTGCCACCCCAGCTTTGTGACGATATCATTCTTCCTATTTCCCCGTTGGAGTTCAAGGATCGCCTGATCTTTGGCCCTTCTTCTGCTTCCTCAGGGGACCCTTCACCTTTGGTTGAGGCCTTAACACTTGCCCCTAATTTCCCAAAATCTTCTTCTTACTACTCTGCATTATCATCACTCTTTCACGCACCACAACAACACTCCTCTTATCTTATTGATCCCAATTATCCATGGCGCAAAACAAATGTCCTTCGTTCCAAAACTGCACCACCTGCAGGTATGGCAGAGATTAACGATTTCAATCACCAACCCGTTGAGCCAAGACCCCAAGTTGGTAGACACTCTATTGTTCACCAGGCCATTATTCTTCTTGTTCTTTATTTGGCTCTAGGGATGATCATTTATTGGTTGAATCGTCCTAATTTTTTAGCAACTGAGACTCATCCTATAGTGGACGCATTATATTTTTGTATAGTGACAATGTGCACAATAGGCTATGGTGACATCACTCCCAATAGTACAACAACAAAGCTTTTCTCTATGTTGTTTGTATTGGTGGGTTTTGGTTTTATTGGCATATTGCTAAGTGGGATGGTTAATTATGTTCTTGATTTGCAGGAGAACCATTTGTTGAGGGCAGTGAAGGGTAGGGGTACAGAAAAGAATGGGATGTCATATATAATTGATGTGAAGAAAGGGAGGATGAGGATTAGGATAAAGGTGGCATTGGCATTGGCATTGGGGGTTGTGGTACTTTGTATTGGAGTTGGTGTTGGAGTTATGCACTTTGTGGAAAGGCTTGGATGGTTAGATTCTTTTTATCTTTCTGTTATGTCTGTGACAACTGTTGGGTATGGCGACCATGCATTCAAGACCTTGCATGGTCGTATCTTTGCTGCAATTTGGTTGCTTGTGTCAACACTTGCAGTGGCCCGGGCATTCCTCTATTTTGCTGAGGCACGAGTGGATAAGAGGCATAGGAGTTTCACAAAGTGGATTCTTGGCCGGGATATGACTATTTCTGAGTTTGTTGCTGCAGACATAGACAATAATGGGTTTGTGAGGTATGGACTGATCTATTTCCATTTCATAAAAGTTCAGTAA 1155 0.4312 MDEPLLPYGSPRTKPPPLPPQLCDDIILPISPLEFKDRLIFGPSSASSGDPSPLVEALTLAPNFPKSSSYYSALSSLFHAPQQHSSYLIDPNYPWRKTNVLRSKTAPPAGMAEINDFNHQPVEPRPQVGRHSIVHQAIILLVLYLALGMIIYWLNRPNFLATETHPIVDALYFCIVTMCTIGYGDITPNSTTTKLFSMLFVLVGFGFIGILLSGMVNYVLDLQENHLLRAVKGRGTEKNGMSYIIDVKKGRMRIRIKVALALALGVVVLCIGVGVGVMHFVERLGWLDSFYLSVMSVTTVGYGDHAFKTLHGRIFAAIWLLVSTLAVARAFLYFAEARVDKRHRSFTKWILGRDMTISEFVAADIDNNGFVRYGLIYFHFIKVQ 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi400g00045 384 PRINTS Two pore domain K+ channel signature 298 307 IPR003280 GO:0005267|GO:0016020|GO:0071805
Sebi400g00045 384 PRINTS Two pore domain K+ channel signature 176 204 IPR003280 GO:0005267|GO:0016020|GO:0071805
Sebi400g00045 384 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 166 356 IPR003280 GO:0005267|GO:0016020|GO:0071805
Sebi400g00045 384 Gene3D - 130 230 - -
Sebi400g00045 384 Pfam Ion channel 266 336 IPR013099 -
Sebi400g00045 384 Pfam Ion channel 139 219 IPR013099 -
Sebi400g00045 384 SUPERFAMILY Voltage-gated potassium channels 133 219 - -
Sebi400g00045 384 FunFam Two-pore potassium channel 3 241 357 - -
Sebi400g00045 384 Gene3D - 241 350 - -
Sebi400g00045 384 SUPERFAMILY Voltage-gated potassium channels 251 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi400g00045 Sebi-Chr400 607452 608606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi400g00045 3 371 Ion Channels AT4G18160 58.747 1.36e-142 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi400g00045 K05389 - gmx:100787238 496.123