Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi400g00034 ATGTCATTACTGAGTTACTTGTTTCTGGCAAACAATTCCCTCTCAGGATTTCTACCATCACATATTAGCCTAAAAAACTTGGAAGAACTATACTTGTATGGCAACCAACTTCATGGAAACATTCCAAGTAGCATATCCAATGCTTCTAAGCTTAACTATCTGGATTTGAGTCACAATAAGTTCAATGGAGTTATACCAAATGCTCTTGTGAATTTGAGAAACCTTCGGTGGCTTGATTTCATTGCTGATGCTTGCAGTATTAATGGTAAAATTCCATTGGAAATTGGAAATTTGAGCCACCTGTTTGCACTGAGCTTGTTTAATAATGATTTAAGTGGATCAATTCCAAAAACAGTTGATGGTTTGCAGTCTCTTCAATATTTGAATCTTGGAAACAACCAACTTCAAGTCTCAAAGACATTCTGGAGGCTTTTAGTAATGGAATTCATGCCCAAGGGGAGCCTTGAAAGGTGGTTGTATTCTCATAACTATTACTTGGACTTCTTGAAAAGGCTAAATATAATGATAGATGTAGCATCTGCATTGGATTATATGCATCATGATTCTTCACCAGTTGTGGTTCACTGTGATGTAAAGCCTAGTAATGTCTTATTGGATGAAAACATGGTTGCTCATTTAAGTGACTTTGGCATTGCCAAACTTCTAAATGATGAACAATCCAAAGAATATACCAAGACTATGGCTACACTTGGCTACATTGCTCCAGAGTATGGATCCAAGGGGACTATCTCTACAAAAGGAGATGTTTACAGTTTTGGAATTATGTTAATGGAAACATTCACAAGAAAGAAGCCAACAGATGAGTTGTTTGTTGATGGATTGAACATGAAAGGTTGGATTAGTGAATCATTACCCCATGCAATCACTCAAATTGTGGATTCCAATTTGTTACAAGATGAAGATTTACCTGAAGAACGAATGAATATGACAAATGTTGTTGCATCATTAAACCAAAACAAGGTCATGTATTTGTCAGAAAATTAA 1005 0.3582 MSLLSYLFLANNSLSGFLPSHISLKNLEELYLYGNQLHGNIPSSISNASKLNYLDLSHNKFNGVIPNALVNLRNLRWLDFIADACSINGKIPLEIGNLSHLFALSLFNNDLSGSIPKTVDGLQSLQYLNLGNNQLQVSKTFWRLLVMEFMPKGSLERWLYSHNYYLDFLKRLNIMIDVASALDYMHHDSSPVVVHCDVKPSNVLLDENMVAHLSDFGIAKLLNDEQSKEYTKTMATLGYIAPEYGSKGTISTKGDVYSFGIMLMETFTRKKPTDELFVDGLNMKGWISESLPHAITQIVDSNLLQDEDLPEERMNMTNVVASLNQNKVMYLSEN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi400g00034 334 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 84 - -
Sebi400g00034 334 Gene3D Transferase(Phosphotransferase) domain 1 150 332 - -
Sebi400g00034 334 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 150 324 - -
Sebi400g00034 334 SUPERFAMILY Protein kinase-like (PK-like) 141 323 IPR011009 -
Sebi400g00034 334 Pfam Protein kinase domain 142 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi400g00034 334 SUPERFAMILY L domain-like 2 142 - -
Sebi400g00034 334 Gene3D Ribonuclease Inhibitor 1 82 IPR032675 -
Sebi400g00034 334 Pfam Leucine rich repeat 26 79 IPR001611 GO:0005515
Sebi400g00034 334 SMART serkin_6 93 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi400g00034 334 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Sebi400g00034 334 ProSiteProfiles Protein kinase domain profile. 27 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi400g00034 334 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 4 136 - -
Sebi400g00034 334 Gene3D Ribonuclease Inhibitor 83 148 IPR032675 -
Sebi400g00034 334 PRINTS Leucine-rich repeat signature 51 64 - -
Sebi400g00034 334 PRINTS Leucine-rich repeat signature 122 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi400g00034 Sebi-Chr400 454317 456715 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi400g00034 142 305 Receptor kinase-like Gene Family AT3G47570 47.191 1.05e-44 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Sebi400g00034 Pkinase 5.1e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi400g00034 - K13420 gmx:100784397 319.316