LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi3g00245	ATGGCTTCATCTTTGGAGGAGCTTCTTGCAGAGGAAGGGTTCAAAGGCAGAAGAGTATCAAGGTCTAGATCTTCCTTCCACTATGGTGCTTCAAGTGAGCCACTTCACTCTTTGGAAGAGAGACTTTGTGTATCAACTGAAAGAATTCAAACACACAGAACAAAGTCTGGTGCCTCACATCAGATTAGAAGTGAACTGTTAAAAAGTAAGACTCATAGGAAGCCAAGAAATGATGTTTGTATAGGAGACAAAACAGATGAACTATTGAAGAATGAGACTGAAAAGAAATCTTCTAGCAATACAAATTCAGGCAAAGGAATTGACAACAATTCATCAGAATACATGCCAAGGTATGAGGTGAGTGAGCGAGAAGATAGCAGAGTGTCTAATGCAAAAAGAGGCAAAGAAAAGTCATTCAAGGATGCAAAGGTGAGTAAGATGCATAGCAGAAGTTCCAGTATACATATGCTTAGACACTCTAGTGAACATGGAAAGAATATGAAACCTGAGGCTGAGGAGGAGTCATACACTAGAGTTGATAACAAAAGCTTTGAAGATATCAGAAATAAAAATAGTCATCATGCAATGCAAGAAGCTTCTAGTCTTGCTCTTGATGAAGTTGCTGTCCAAGCAGTAGTTTCCATTCTAAATGGATATATAAAACGTTTTCTAAAGGATGAGGATTTTCGGTCTACTTTGCGCCATAATTGTTTCTCCTCCTTGAATTTTATTCAGGTGGATGAAGAGAACAATACTGAGATCAAAGTCATTAGAAGTCTTGAGCAAGCAATTGAGACCATAGAACAACATGCTGAGGAACCTATATCTGCCTCATATCTGAAAAAAGCCATGATGCAACTTAGCATTATTACAGGTTTGAGTTTAAATGATCTCAAGTATGGTTGTACATGTGGGATCCCAAATTATAAGTTATCAGCCTGTGCTCATCTTTACCTCAGTGTGGCAAGGACAACATTGTTGCAAGAACTGTGGGAGCATCTATTTTCTCCACAATTTTCTCATTTGAAGGCATGGTACAACAAGGAAGCTGAAATTTTAATAGATACACCAAGTAAAACCAAAAGGCTAAAGCTTCTTCAAAAAATGTATAATGAACATTTGGATTCTGGAACTCATATATTTGCTGTATATTACAAAGATTGGCTTACTGAAGGAGTAGAATCTCCAACTATTCCTTCTATTGGCATTCCATCAATATCTGTTACAGGAAGTCAACAGGGAAGTTCAATTGGTCATTCTTCAGAGTCTGCTAGCTCCACAGATCCATTCTCACCACAGCCAATGGTCAGCAAGAAACTATATGATTCTGTCTTTGGTATCTCTAGTAAACCTGGAGTCTATGAAGCTGAAGATGATAAGGATGAAGATAGCCTAGAAGATTGTGTTAGAGGTTCTTATGGTTCAACTATTGTTAAACAAACATTAATATATGAGTCTGAAACTGTTAAATTTACTGATAAAGATACTGAAGATTTCACTCAAAGTGTACCAGTTGATGCATTCCATCCTCCAAATAAGACAAGCTCTACTCTTGAAGGATCATATTTTGAAAGCATTCCACAGGAATTTATTTGTCCACTTACTGGAAATATTTTTGAGGAACCAGTCACCCTAGAGACAGGTCAAACCTTTGAAAGAAAAGCCATCAAAGCATGGTTTGAAAAGGGAAACAGAACATGCCCAGTAACAGGAAATGCTTTAGAATGTATAGCCATGCCATTTACCAACCTTATTTTGAAGCGATTGATTGATAATTGGAAGTCTGAACGCTTTAATCATATTATGGATTTTGCTTCTCCATCAGTGGAAAATTCAAAGGAACTTAAGTTGAAAAAGAAGGATGAGGCTACTGTTTTCAAGTTAGAGGGTCTTCTGTCCTCTATGAAAGAAGAGGACAAATCAACATATGCTAAGCATCTGATATCTTTAGGAGTTCTTTCATTTCTTTTTAGGAGGTTTGAAGTGGGAAATATGGAAGAAAAATCACATGTGGTGGCACTCTTGCTAACTTTTATTCATGCAGACTCTGGTTGCATATTTCAGATAGCAAGAAATGTTAACAGAAAATGTCTTCTTGAGCTTCTTCACAGCAAAGAGGTTACCCCAATAACAAATGCAATACTATTCCTTACTGAACTTTTATCAATGAAGAGGAGAAAGGATGTTACTTCATTCATAAGTGGCTTGGCGGGTGAAGATGTATTTGATACAATGCATATTCTGCTCATGTATCTCAAGAATTCTTCTCCACTTGAAAAGCCCTTAACTGCTGTCCTTTTGTTACACTTTGATCTACTGGTTGAGCCTCAAAAGTTTAGTATATACAGGGAGGTGGCTGTGAAAGCCATTGCAGTGGCACTTCATGCCAGCTTAAATGATGAGAAAGCCCGAGAAAAGTGTTGCACAGCACTTCTAATCATGTGTGGCCATTTTTCTTCTATGGGAAAGATACTGACCAAGACTAGCATCTTGAAACAAGCAAGTTATAATAATGATAACTCAGAATTGAAACCTCCTAGACATGAAGAAGAGGGTCAACAATCAGATATAACCATTTCATCAGAAGATGAAGAAGAAAGGGGTGAAGAGTTGCAAATGATCTTGTTAGAATCGTTGATTGGTGATGGAGAAAGCCCATTTTTGAAGACCATATCAAGATGTTTAGATTCTAGGCACAAAGATTTGGTGAGGGCATGTCTAATAACTGTTATATGGTTGAGCTCCTCACTTTCTGTGCTATTTAATGCCGGATTGCATCTTCCTGCCTTCTTAGCCATCATCTTTCAGTTGAAAGGAATCCTGGAAAATGGAGAACTTGAGCTCAAGATCCTTGCATCTATGTCCTTGCTTAACTTCAGTAAAATATCAGAATGCAGAACGGTTTTGAAGACTATGGCAGAAGATATTGCTCCACTTCTTTATGAACTTGTTGATGTAACATGGACTGCGAAGCAGCTGCATGCCATTCTGTCTAGGGAGAATCTGTAG	3009	0.3782	MASSLEELLAEEGFKGRRVSRSRSSFHYGASSEPLHSLEERLCVSTERIQTHRTKSGASHQIRSELLKSKTHRKPRNDVCIGDKTDELLKNETEKKSSSNTNSGKGIDNNSSEYMPRYEVSEREDSRVSNAKRGKEKSFKDAKVSKMHSRSSSIHMLRHSSEHGKNMKPEAEEESYTRVDNKSFEDIRNKNSHHAMQEASSLALDEVAVQAVVSILNGYIKRFLKDEDFRSTLRHNCFSSLNFIQVDEENNTEIKVIRSLEQAIETIEQHAEEPISASYLKKAMMQLSIITGLSLNDLKYGCTCGIPNYKLSACAHLYLSVARTTLLQELWEHLFSPQFSHLKAWYNKEAEILIDTPSKTKRLKLLQKMYNEHLDSGTHIFAVYYKDWLTEGVESPTIPSIGIPSISVTGSQQGSSIGHSSESASSTDPFSPQPMVSKKLYDSVFGISSKPGVYEAEDDKDEDSLEDCVRGSYGSTIVKQTLIYESETVKFTDKDTEDFTQSVPVDAFHPPNKTSSTLEGSYFESIPQEFICPLTGNIFEEPVTLETGQTFERKAIKAWFEKGNRTCPVTGNALECIAMPFTNLILKRLIDNWKSERFNHIMDFASPSVENSKELKLKKKDEATVFKLEGLLSSMKEEDKSTYAKHLISLGVLSFLFRRFEVGNMEEKSHVVALLLTFIHADSGCIFQIARNVNRKCLLELLHSKEVTPITNAILFLTELLSMKRRKDVTSFISGLAGEDVFDTMHILLMYLKNSSPLEKPLTAVLLLHFDLLVEPQKFSIYREVAVKAIAVALHASLNDEKAREKCCTALLIMCGHFSSMGKILTKTSILKQASYNNDNSELKPPRHEEEGQQSDITISSEDEEERGEELQMILLESLIGDGESPFLKTISRCLDSRHKDLVRACLITVIWLSSSLSVLFNAGLHLPAFLAIIFQLKGILENGELELKILASMSLLNFSKISECRTVLKTMAEDIAPLLYELVDVTWTAKQLHAILSRENL	1002

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi3g00245	1002	SMART	Ubox_2	529	593	IPR003613	GO:0004842\|GO:0016567
	Sebi3g00245	1002	Pfam	U-box domain	526	597	IPR003613	GO:0004842\|GO:0016567
	Sebi3g00245	1002	SUPERFAMILY	ARM repeat	640	968	IPR016024	-
	Sebi3g00245	1002	MobiDBLite	consensus disorder prediction	155	179	-	-
	Sebi3g00245	1002	CDD	RING-Ubox_PUB	527	575	IPR045210	-
	Sebi3g00245	1002	MobiDBLite	consensus disorder prediction	838	864	-	-
	Sebi3g00245	1002	ProSiteProfiles	U-box domain profile.	525	600	IPR003613	GO:0004842\|GO:0016567
	Sebi3g00245	1002	SUPERFAMILY	RING/U-box	519	599	-	-
	Sebi3g00245	1002	MobiDBLite	consensus disorder prediction	117	148	-	-
	Sebi3g00245	1002	MobiDBLite	consensus disorder prediction	95	116	-	-
	Sebi3g00245	1002	MobiDBLite	consensus disorder prediction	49	64	-	-
	Sebi3g00245	1002	PANTHER	OS04G0584500 PROTEIN	514	1000	-	-
	Sebi3g00245	1002	MobiDBLite	consensus disorder prediction	49	179	-	-
	Sebi3g00245	1002	MobiDBLite	consensus disorder prediction	409	432	-	-
	Sebi3g00245	1002	MobiDBLite	consensus disorder prediction	65	94	-	-
	Sebi3g00245	1002	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	512	603	IPR013083	-
	Sebi3g00245	1002	MobiDBLite	consensus disorder prediction	11	34	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi3g00245	Sebi-Chr3	3870198	3875744	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi3g00245	526	642	U-box Gene Family	AT5G42340	37.607	3.93e-15	78.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi3g00245	-		-	lja:Lj1g3v3329610.1	1447.57