Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi3g00242 ATGGCAGCATCAACATCTTGTGTTAGCAACAATCCATCCCCTATAAAAGAGACAAATTTGATCTCTCATTCATATCCTACACCTCTTGCAAGATATGAGGAAGTTGTAAGAAATCCAAAGTTGTTCATGTTCACATTGGAGAAGCTCCATGCTTCCATGGGTACCAAGTTCATGATTCCCATTATTGGAGGAAAAGAATTAGATTTGCATCGCCTCTTCGTTGAAGTGACTTCTCGTGGAGGGATTGAGAAGCCTTCCCTGGGAGTTCAACCATCTATCTTTCAACAATCAATAGATAATATTGCTGAATTGCACGAAGGATCTCGAGTAAATGGAGTCATTGATGGAAAGTTTGAAAGTGGGTATCTAATTTCTATTTCAATAGGTTCAGAGATTCTCAAAGGCGTGCTTTATGAAGCACCACAAATCCCGATATCGCCGACCTTTGCAACACATCAACAAAGCATTATGGCTAAGAGCAACAATGCCTTTACTGCTTTAGGTGTCCATCGTCGACATCGCAGGAAGAAATCAGAAATCAAAAGGAGAGATCCCGCACATCCAAAACCCAATAGAAGTGGTTATAATTTCTTCTTTGCTGAGCAACATGCTAGACTAAAGCTACTAAATCAAGCAAAGGACAGAGATATTAGTAGGACAATTGGTGAACTCTGGAACAAGTTAAAAGAGCCTGAAAAATCAGTTTATCAAGAGAAGGCTCTTAAGGATAAAGAGAGGTACAAGGCAGAAATGGAGAATTATCGCGAGAAATTGAAGACGTGCCATGTGATCAATGATGTTGTGCCACCACAACAACAACTTCCTGAAGTAGATACAACTTTGGTTGATGTGGACATAAAATTGCTTGGTTCTCCTCAAACTCCGGAGGAGAGCAGTTCTGGTGGGAGTGACTATGAAGATGATATCAATATGGATGCATCTCCTAGAGTAAAGGTGGGTATTGAAGCTACCTATATGGGTTCAAACAAGGCATCTGATGAGGGGGATTGTGAGCTTATTGGTCATTGCGAGAGAGAAAGGGATAATAGAGTTCAACTGGTTTAG 1065 0.4066 MAASTSCVSNNPSPIKETNLISHSYPTPLARYEEVVRNPKLFMFTLEKLHASMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKPSLGVQPSIFQQSIDNIAELHEGSRVNGVIDGKFESGYLISISIGSEILKGVLYEAPQIPISPTFATHQQSIMAKSNNAFTALGVHRRHRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLNQAKDRDISRTIGELWNKLKEPEKSVYQEKALKDKERYKAEMENYREKLKTCHVINDVVPPQQQLPEVDTTLVDVDIKLLGSPQTPEESSSGGSDYEDDINMDASPRVKVGIEATYMGSNKASDEGDCELIGHCERERDNRVQLV 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi3g00242 354 Gene3D - 19 88 IPR036431 GO:0003677
Sebi3g00242 354 Pfam ARID/BRIGHT DNA binding domain 40 86 IPR001606 GO:0003677
Sebi3g00242 354 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 106 284 - -
Sebi3g00242 354 Pfam HMG (high mobility group) box 188 255 IPR009071 -
Sebi3g00242 354 CDD HMG-box_AtHMGB9-like 188 254 - -
Sebi3g00242 354 PRINTS High mobility group (HMG1/HMG2) protein signature 220 239 - -
Sebi3g00242 354 PRINTS High mobility group (HMG1/HMG2) protein signature 239 259 - -
Sebi3g00242 354 ProSiteProfiles ARID domain profile. 36 130 IPR001606 GO:0003677
Sebi3g00242 354 SUPERFAMILY HMG-box 175 259 IPR036910 -
Sebi3g00242 354 MobiDBLite consensus disorder prediction 168 182 - -
Sebi3g00242 354 SUPERFAMILY ARID-like 33 84 IPR036431 GO:0003677
Sebi3g00242 354 SMART bright_3 37 107 IPR001606 GO:0003677
Sebi3g00242 354 MobiDBLite consensus disorder prediction 168 194 - -
Sebi3g00242 354 Gene3D High mobility group box domain 172 265 IPR036910 -
Sebi3g00242 354 SMART ARID_2 33 161 - -
Sebi3g00242 354 SMART hmgende2 187 256 IPR009071 -
Sebi3g00242 354 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 188 255 IPR009071 -
Sebi3g00242 354 MobiDBLite consensus disorder prediction 289 314 - -
Sebi3g00242 354 Coils Coil 237 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi3g00242 Sebi-Chr3 3833274 3837134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi3g00242 3 84 ARID Transcription Factor Family AT1G04880 56.098 7.47e-23 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Sebi3g00242 HMG_box 6e-14 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi3g00242 - - lja:Lj1g3v3329490.2 319.701