Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi3g00241 ATGCCGGAGCTTCGTAGTGGACGCCAGCGTCGTCGTGGTGTTCCGGTAGGCCGTAGAAGCTCAGAACCACCGTCCCTGGCGGCAAAATACGTGAAAACCCGGGCTGCAGTAGCTGCAGCTAAGAAACTTGAGGAGGAGAAGGCTGTGATCGTAATATCAGAGCGTGATAGCGACATAAATAAGGAGAAGGAAGGCTTGATGGGTGACGAAAGTGGCGGTTTGAGTGCTAATAAGGGCCTTCCTCAAGAGGATGAGGGCAACACTGCCCCTTTTCCGGAGAGGGTTCAAGTAGGAGGATCACCTGTGTACAAAGTGGAGAGGAAATTGGGTAAAGGTGGGTTTGGACAGGTTTTTGTTGGCCGCCGAGTTACTGGTGGTAATGACCGTATTGCTGGCCCTGGTGCCACTGAGGTGGCTTTGAAATTTGAACATAGAAACAGTAAAGGCTGTAACTATGGCCCTCCCTATGAGTGGCAAGTGTACAACACCCTTGGTGGTAGTCATGGAATACCTAAAGTACATTATAAAGGAAGACAGGGAGAATATTACGTAATGGTTATGGACATGCTTGGTCCAAGCTTGTGGGATGTATGGAATTCCTCAAGCCAGGCGATGTCTGCAGAAATGGTCGCATGTATTGCTGTTGAGTCATTGTCAATTCTGGAGAAGATGCACTCAAGAGGATATGTGCATGGCGATGTAAAACCAGAAAACTTCTTACTAGGCCAGCCAGGCACAGCACAAGAGAAGAAATTGTTTCTTGTTGACCTTGGATTAGCAACAAAATGGAGAGACACCTCCAGTGGACAGCATGTTGAATATGATCAACGCCCTGATATGTTTAGAGGGACTGTTCGATATGCCAGTGTTCATGCTCACTTGGGAAGAACTGCTAGTCGAAGGGATGATCTTGAATCTCTTGCATATACACTTATTTTCCTTCATAAAGGCCGGTTACCATGGCAAGGTTATCAGGGTGATAACAAATCCTTCCTTGTTTGCAAAAAGAAGATGGGAACATCTCCTGAGATGTTATGCTGCTTCTGCCCTCCTCCTTTTAGGCAGTTTCTTGAGGTTGTAGTTAATATGAAATTTGATGAAGAACCTAACTATTCCAAGCTAATATCTCTGTTTGATGGTATGCTTGGACCAAATCCTGCATTGCGACCAATTAACACCGAAGGTGCTCAAAAGGTTGGGCAAAAGAGGAGCAGATTGAATACTGAGGAAGAGGATGATTCACAGCCCAAAAAGAAGGTTCGTTTGGGGGTTCCTGCTACACAATGGATTTCAGTTTACAATGCAAGACTGCCAATGAAGCAAAGGTATCATTACAACGTAGCGGATGCAAGATTAGCACAGCATGTGGAGAGAGGGGTTGCAGATGGTCTTCTTATTAGTTGTGTAGCTTCTTGTTCCAATCTGTGGGCACTTATTATGGATGCTGGAACTGGTTTTACAAATCAAGTTTACAAGTTGTCTCCTTTCTTCTTACACAAGGAATGGATCATGGAGCAGTGGGAGAAGAACTATTACATTACTTCTATAGCTGGGGCTAATAATGGGAGCTCTCTTGTGGTGATGTCAAAAGGCACCCAGTATACACAACAATCATACAAAGTAAGTGATTCTTTCCCCTTCAAATGGATAAACAAGAAGTGGAGAGAAGGTTTTCATGTGACTTCAATGGCCACTGCTGGAAGTCGCTGGGGCGTTGTTATGTCTCGGAATGCTGGATTCAGTGATCAGGTCGTTGAACTTGATTTTCTCTACCCTAGTGAAGGCATCCACAGACGTTGGGATAGTGGTTACAGGATTACAGCAACTGCTGCTACATGGGATCAATCTGCTCTTATTTTAAGCATTCCAAGGCGCAGGCCTGGCGATGAAACTCAGGAAACCCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGGAAAAATGGTCAAAAAACCTTTATCTTGCTTGTCTGTGCTATGGGCGCACAGTATGCTGA 1998 0.4515 MPELRSGRQRRRGVPVGRRSSEPPSLAAKYVKTRAAVAAAKKLEEEKAVIVISERDSDINKEKEGLMGDESGGLSANKGLPQEDEGNTAPFPERVQVGGSPVYKVERKLGKGGFGQVFVGRRVTGGNDRIAGPGATEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEYYVMVMDMLGPSLWDVWNSSSQAMSAEMVACIAVESLSILEKMHSRGYVHGDVKPENFLLGQPGTAQEKKLFLVDLGLATKWRDTSSGQHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDNKSFLVCKKKMGTSPEMLCCFCPPPFRQFLEVVVNMKFDEEPNYSKLISLFDGMLGPNPALRPINTEGAQKVGQKRSRLNTEEEDDSQPKKKVRLGVPATQWISVYNARLPMKQRYHYNVADARLAQHVERGVADGLLISCVASCSNLWALIMDAGTGFTNQVYKLSPFFLHKEWIMEQWEKNYYITSIAGANNGSSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWDSGYRITATAATWDQSALILSIPRRRPGDETQETLRTSQFPSTHVKEKWSKNLYLACLCYGRTVC 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi3g00241 665 PANTHER CASEIN KINASE-RELATED 103 627 - -
Sebi3g00241 665 MobiDBLite consensus disorder prediction 403 417 - -
Sebi3g00241 665 CDD STKc_CK1 103 378 - -
Sebi3g00241 665 SMART serkin_6 103 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi3g00241 665 Pfam Protein kinase domain 103 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi3g00241 665 ProSitePatterns Protein kinases ATP-binding region signature. 109 141 IPR017441 GO:0005524
Sebi3g00241 665 ProSiteProfiles Protein kinase domain profile. 103 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi3g00241 665 FunFam casein kinase 1-like protein HD16 76 421 - -
Sebi3g00241 665 Gene3D Transferase(Phosphotransferase) domain 1 84 426 - -
Sebi3g00241 665 MobiDBLite consensus disorder prediction 1 26 - -
Sebi3g00241 665 MobiDBLite consensus disorder prediction 59 95 - -
Sebi3g00241 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Sebi3g00241 665 MobiDBLite consensus disorder prediction 389 417 - -
Sebi3g00241 665 SUPERFAMILY Protein kinase-like (PK-like) 103 386 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi3g00241 Sebi-Chr3 3793002 3799428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi3g00241 221 378 MAP Kinase Kinase Kinase AT5G50180 25.000 4.16e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Sebi3g00241 Pkinase 1.8e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi3g00241 - - gmx:100819969 1205.28