Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi3g00176 ATGGCTTCCCTGCTTATTCTCCTCCCTCCTATTCCTATCCTTATTCTTCAATTCATAATCCTCTTGATACTCATTCAGATACCTCCATATTTAAGCTCCGACGATTATAGAGTCTGCAGTAACAATCTGTTTAGTTGTGGAGGAAACATAACAAACATTGGTTTTCCTTTCTGGGGAGGCGATCGACCAGACAGGTGTGGCCACCCTCTGTTGCATCTCACCTGCGAAGGAAACATCAGCTACATAACAATCAAGGATGTCAAGTACAAGGTTTTGGAGGCCAATCCTAAAGAATCTACTTTGAGAATCACCAGAGTGGACTACCTCTACTTTGAAGGATTATGCCCATCAAAACTAGTCAACACCACCCTTGACACTAAGCTCTTTGTTTATGGCTCTGACTCTGAGTATAAGAATCTTACCCTTTTCTATGGTTGTCCTGCTTCAAATCCTTTCTCCTCTCCTGCAATTGGACGTCTTCCTTGTTTCACAAATGGGGATTTCGGTGAATTTGTATATACTCAGTTTGGATCTTTTGGCCCTCCTCTGTCTTGCAAAGAAAGTGTGGTTGTTCCCGTTTCTCCATTATGGATTGATATTAATGATTTCATTAAAACACAAGAGGCAATCAGAGCTGGATTTGTTGTGAGATGGATAGCAGGTATTGAACAATGTGAAAATTGTAAAAAATCAGGTGGTGGAGTCTGTGGTTATGATGGGAATTCAAATCAAACAACGTGCTACTACTGCAATGATCAATCTTGTTCTAATTTCTCGCCAGATACCAAAGCACCTCCGTCTACAGGTAAAAGCAGTTCAAACAAAGTAGGCATTGTAATAGGCGTTGTTGCAGGAGTTGCAGCCCTTGTTGGCATTCTTTGCTGTGTGTGCTTTATGGTGAGAAGAAAGAGAAGAATTGCTAAGCAATCAACAAGCAAGGACCTCCTCATGCATAATTCAAGCAGTGTCGCTCTTACCTCTACTACTAATTCGTCTCAAACTCAAAGTGTCTCTTCTTACCCTTCTTCCAAGTCTGGCACAGTACCAAGGAGTTACTACTTTGGTGTTCAGGTGTTTACTTATGATGAACTAGACGAAGCTACCAAAAATTTTCACACTTCAAGAGAACTTGGTGAGGGAGGTTTTGGCACTGTTTACAAAGGTGAACTCAAAGATGGACGTGTGGTTGCTGTGAAACGTCATTATGAAAGCAATTTTAAGCGTGTTGAGCAGTTCATGAATGAAGTTGAGATTCTAGCCCGGTTAAGGCATAAGAACCTGGTGACACTCTATGGATGCACCTCAAGACAAAGCAGAGAACTTCTCCTTGTTTATGAATTCATACCTAATGGAACTGTGGCTGATCATCTTCATGGAACACGATCAAAATCAGCTTTACTTCCTTGGCCTAACCAAGAATTGCATGAGTTGGTTGATCCATATATTGGATTTGAAAAAGACCCTGCTGTGAGGAGGATGACAACAGCAGTGGCAGAATTGGCCTTTAGGTGTTTGCAGCAGCAGAGAGACATGAGACCTTCCATGGATGAGGTGTTGGAGATCTTGAGAGCAATCAAGAGTGATGAGCTTGACACAAGGGAAGCAAAAGTAGTGGATGTTAGGACAGATGAACTTGTACTTTTGAAGAAGGTTCCTTCCCCGGTTTCACCAGATTCAGTTGCTGATCATAAATGGGTTAGCGGCTCTTCCACTTCTACATCTTATTCCTCATAG 1734 0.4193 MASLLILLPPIPILILQFIILLILIQIPPYLSSDDYRVCSNNLFSCGGNITNIGFPFWGGDRPDRCGHPLLHLTCEGNISYITIKDVKYKVLEANPKESTLRITRVDYLYFEGLCPSKLVNTTLDTKLFVYGSDSEYKNLTLFYGCPASNPFSSPAIGRLPCFTNGDFGEFVYTQFGSFGPPLSCKESVVVPVSPLWIDINDFIKTQEAIRAGFVVRWIAGIEQCENCKKSGGGVCGYDGNSNQTTCYYCNDQSCSNFSPDTKAPPSTGKSSSNKVGIVIGVVAGVAALVGILCCVCFMVRRKRRIAKQSTSKDLLMHNSSSVALTSTTNSSQTQSVSSYPSSKSGTVPRSYYFGVQVFTYDELDEATKNFHTSRELGEGGFGTVYKGELKDGRVVAVKRHYESNFKRVEQFMNEVEILARLRHKNLVTLYGCTSRQSRELLLVYEFIPNGTVADHLHGTRSKSALLPWPNQELHELVDPYIGFEKDPAVRRMTTAVAELAFRCLQQQRDMRPSMDEVLEILRAIKSDELDTREAKVVDVRTDELVLLKKVPSPVSPDSVADHKWVSGSSTSTSYSS 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi3g00176 577 Gene3D Phosphorylase Kinase; domain 1 345 445 - -
Sebi3g00176 577 MobiDBLite consensus disorder prediction 563 577 - -
Sebi3g00176 577 Pfam Protein tyrosine and serine/threonine kinase 372 461 IPR001245 GO:0004672|GO:0006468
Sebi3g00176 577 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 350 447 - -
Sebi3g00176 577 Pfam Wall-associated receptor kinase galacturonan-binding 39 104 IPR025287 GO:0030247
Sebi3g00176 577 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 19 470 IPR044652 GO:0004672
Sebi3g00176 577 SUPERFAMILY Protein kinase-like (PK-like) 356 535 IPR011009 -
Sebi3g00176 577 MobiDBLite consensus disorder prediction 553 577 - -
Sebi3g00176 577 MobiDBLite consensus disorder prediction 326 346 - -
Sebi3g00176 577 Pfam Wall-associated receptor kinase C-terminal 184 250 IPR032872 -
Sebi3g00176 577 ProSiteProfiles Protein kinase domain profile. 371 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi3g00176 577 ProSitePatterns Protein kinases ATP-binding region signature. 377 399 IPR017441 GO:0005524
Sebi3g00176 577 Gene3D Transferase(Phosphotransferase) domain 1 446 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi3g00176 Sebi-Chr3 2630894 2641260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi3g00176 471 571 Receptor kinase-like Gene Family AT1G25390 41.818 3.45e-17 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Sebi3g00176 PK_Tyr_Ser-Thr 5.4e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi3g00176 - - aip:107635700 448.743