Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi3g00157 ATGGATGAGTCATCTCCTAATACATTGGTACAGTGTCGAATATGCCATGATGAGGATCAAGACTCTAACATGGAGACACCCTGTTCTTGTAATGGCACCTTGAAGTATGCACATCGAAAATGTGTTCAAAGATGGTGCAATGAAAAAGGAGATACTACCTGTGAAATTTGCCAACAGCAATTAAGGGGCTATACTGCACCTCCACCAGCTCCCTTATTCCCTTATGGTGGTTCTCCAATAAATTTTGGAGGGAACTGGGAGATGTCAAGATGGGATCTTCATAATCATCATCAGTTCATAGCAATGTTTAATGCTAATAGTGATTTCCTAGACCCTGACTTTGAGTATCCAGCACCTTCTACATGGAGCCTGATATACTACCGCATTGTTGCCATGATTTTTATTGTTCTTCTTGTTTTAAGACATACACTTCCAATCATATTTATACTGAGTGGAGTAGGAGAGTATTCATTGACAGTGTTTATGTTAATAGTGTTGAGAATCATTGGAATGATTGTACCAGTGTATATCATGGTTAAAGCTATTATTGCGATCCAAAGGCTTCCATACCAGCATCATCATTCCTCTATGCAATCACATGAGGAAATTGACATGGAGCAGTCTCAGTTGCGTGTCATTCATATTCAGTGA 651 0.3932 MDESSPNTLVQCRICHDEDQDSNMETPCSCNGTLKYAHRKCVQRWCNEKGDTTCEICQQQLRGYTAPPPAPLFPYGGSPINFGGNWEMSRWDLHNHHQFIAMFNANSDFLDPDFEYPAPSTWSLIYYRIVAMIFIVLLVLRHTLPIIFILSGVGEYSLTVFMLIVLRIIGMIVPVYIMVKAIIAIQRLPYQHHHSSMQSHEEIDMEQSQLRVIHIQ 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi3g00157 216 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 3 188 IPR033275 -
Sebi3g00157 216 SMART ringv_2 11 58 IPR011016 GO:0008270
Sebi3g00157 216 ProSiteProfiles Zinc finger RING-CH-type profile. 4 64 IPR011016 GO:0008270
Sebi3g00157 216 CDD RING_CH-C4HC3_MARCH 12 58 - -
Sebi3g00157 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 66 IPR013083 -
Sebi3g00157 216 SUPERFAMILY RING/U-box 9 61 - -
Sebi3g00157 216 Pfam Protein of unknown function (DUF3675) 63 182 IPR022143 -
Sebi3g00157 216 Pfam RING-variant domain 12 57 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi3g00157 Sebi-Chr3 2293509 2295248 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi3g00157 2 62 C3H Transcription Factor Family AT2G37950 40.625 3.01e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi3g00157 - - gmx:100806609 320.472