Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi3g00142 ATGAAGGCTGGTTTTGCTGGAGATAGTGCCCCATGTGTTGTGTTTCCCACAATTGTAGGTCATCCTCGTCACAATGGTGTGATGGTTGGCAATGACATGGACCAAAAGAATGCATATGTCGGTGATGAAGCGTTGTTTAATTATGATACTGTGACCCTCAAGCACCCAATTGAACATGGAATTGTGAGGTATTGGGATGATATGGAAAAGATTTTCCATCATACCTTCTATAATGAGCTTCGTGTTACCCCAGAAAAGCATCCAGTTATGCTAACTGAGGTTCCTCTTAATCCCAAGGCTAACCGTGAGAAGATGACCCAAATCATGTTTGAGACTTTTACTACCCCTTCTATATATATAAGCTTTAGTGCTCTCCATATACTATATGCGTCTGGTCGTACTACTGGTATTGTTATGGATTCTGGTGGTGGAATGAGTTGTGTTGTCCCTGTGTACAATGGCCAACCTATCCCATATGCCACTCAACGTCTTGATCTGGCTGGTGGTGACATAACTGATTTCTTGATGAAAATTTTGAATAAACGTGGTTATTCTTTCAACACCTCAGCAGAACGTGAAATTATAAGAGATATGAAAGAAAAGTTGGCTTACATTGCCCTTGACTATGAGCAAGAGTTGGTGACAGGCAAGACAAACAATAGTTTGAAGAGATATGAGTTGCCTGACGGGAGGGTAATCAGTATTGGTGATGAGTGTTTCAAATGTGCAGAGGTGTTGTTCCAACCATCCTTGATACAAAGTAAAGAACCTGGCATTCATGAAGCAATATACAACTCCATAATGAAATGTGATGATGATATCAGGAAAAATTTGTATGATAACATTATCCTTTCTGGGGGAACAACCTTGTTACCAAATATTGTTGATAGAATGAGGAAGGAAATCAGTGTATTAGCCCCAAGAAGCATGAAGATCAGGGTTGTGGCGCCACCTGAGAGAAAGTATGTTGCTTGGATTGCTTGTTCTATCTTGGCATCCCTTAGCACCTTCAAGCCGGTTTGTTCCATTCCTTCACTCTTTTGCTAA 1047 0.4078 MKAGFAGDSAPCVVFPTIVGHPRHNGVMVGNDMDQKNAYVGDEALFNYDTVTLKHPIEHGIVRYWDDMEKIFHHTFYNELRVTPEKHPVMLTEVPLNPKANREKMTQIMFETFTTPSIYISFSALHILYASGRTTGIVMDSGGGMSCVVPVYNGQPIPYATQRLDLAGGDITDFLMKILNKRGYSFNTSAEREIIRDMKEKLAYIALDYEQELVTGKTNNSLKRYELPDGRVISIGDECFKCAEVLFQPSLIQSKEPGIHEAIYNSIMKCDDDIRKNLYDNIILSGGTTLLPNIVDRMRKEISVLAPRSMKIRVVAPPERKYVAWIACSILASLSTFKPVCSIPSLFC 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi3g00142 348 SUPERFAMILY Actin-like ATPase domain 132 341 IPR043129 -
Sebi3g00142 348 SUPERFAMILY Actin-like ATPase domain 1 138 IPR043129 -
Sebi3g00142 348 Gene3D - 1 341 - -
Sebi3g00142 348 CDD NBD_sugar-kinase_HSP70_actin 60 167 - -
Sebi3g00142 348 FunFam Actin, alpha skeletal muscle 166 256 - -
Sebi3g00142 348 PANTHER ACTIN 4 337 IPR004000 -
Sebi3g00142 348 Pfam Actin 1 341 IPR004000 -
Sebi3g00142 348 SMART actin_3 1 347 IPR004000 -
Sebi3g00142 348 FunFam Actin, alpha skeletal muscle 1 135 - -
Sebi3g00142 348 FunFam Major actin 230 323 - -
Sebi3g00142 348 Gene3D Actin; Chain A, domain 4 166 256 - -
Sebi3g00142 348 Gene3D - 124 323 - -
Sebi3g00142 348 PRINTS Actin signature 35 46 IPR004000 -
Sebi3g00142 348 PRINTS Actin signature 221 237 IPR004000 -
Sebi3g00142 348 PRINTS Actin signature 10 19 IPR004000 -
Sebi3g00142 348 PRINTS Actin signature 101 114 IPR004000 -
Sebi3g00142 348 PRINTS Actin signature 126 145 IPR004000 -
Sebi3g00142 348 PRINTS Actin signature 70 88 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi3g00142 Sebi-Chr3 2078487 2080233 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi3g00142 1 338 Cytoskeleton Gene Families AT3G12110 71.091 1.30e-179 501