Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi3g00130 ATGGCCAAGAAGTATGAGGGACATTCCATTGGAATTGACCTTGGCACTACCTACTCATATGCAAAAAGGTTAATTGGAAGAAAATACAGTGATTGTATTATTCAGAAGGATCTACAGTTGTGGCCTTTTAAGGTTATTGCTGGTACTGATGATAAACCTATTATTGTTGTGAAGTATAAGGATCAAGAAAAGCGCTTTGTAGCTGAGGAAATTTCATCTATGGTCCTTGCAAAGATGAGGGAGATTGCAGAGACATTTTTGGAGTCTCCTCGAAAAGCCACCATAGATGCTGGTGTCATTGCTGGCCTCAATGTTATGAGGATAATCAATGAGCCTACTGCTGCTGCTCTTGCATATGGCCTTCAAAAGAGAGACAATTTTGCTGGAAAAAGAAACGTTTTCATCTTTGATCTTGGTGGTGGCACTTTTGATGTTTCTCTTGTCACAATTAAGGATGATATTGATACCTTTGAAGTTAAGGCCACTGCTGGAGACACTCACCTTGGAGGAGAGGACTTTGATAACAGAATGGTTAACCACTTTGTGCAAGAGTTTAATAGGAAGAACAAAGTTGACATAAATGGGAACCCAAGAGCCCTGAGGAGATTGAGAACTGCTTCTGAAAAGGCAAAAAGGACACTGTCATTTGATTCTGAGGCCACAATTGAGATAGATGCTATATGTCAGGTGTATGGACATTTCAAAAAGTGTATGGACATTGTTGAGAGGTGTCTTATGGATGCTAAGATGGACAAGAGTAGTGTAGATGATGTTGTTCTTGTTGGTGGCTCTTCTAGGATTCCCAAATTGCAGCATCCTGATGAGGCTGTTGCTTATGGTGCAGCTGTCCAGGCTGCTTTGTTGAGTGATGGCATTGAGAATGTTCCAAACTTGGTGTTGTTGGAAGTTACTCCTTTGTCACTTGGTGTTGCAACTAAAGGAGACCTCATGGAAGTAATGATTCCTAGGAATACTGCCATTCCTACAAAGAAGGAACTAATATATGGTACAATTGAAGATAATCAATCATCAGTCCTTGTTAAGGTCTATGAAGTTGAGAGGACAAAAGCTAGTGATAACAATTTGTTGGGTTTGTTTAATCTTTCAGTTCCTCCTGCTCCTAGATGCCTTCATATTAAAGTGTGTTTTGCTATTGATGCTGATGCTGAGGAAATTGAGAGAATGATTGAGGAAGCTGTGAATTACAAGGCTGAAGATATGAATTACAAGAAGAAGGTTAAGGTAATTAATACTTTGGATAGTTACATTTATAATATGGATGAAGTTATGATGGATAAGGGTAGTTCTAAGCTTTCCCCACAAGACAAAAACAAGATCAATTCTGCAATTATGAGAGGCAGAGATTTGCTTGATAACAACCAGCAAGAGGAAGTGTATGTGTTTGAGAACTTTTTGAAGGAGCTTCAGAGCATCTATAAGTCCTCTATGGAAAAGATCAACAATAGTTGCGCTTACGAGGAAAGTGATGATGATTATTGA 1500 0.3907 MAKKYEGHSIGIDLGTTYSYAKRLIGRKYSDCIIQKDLQLWPFKVIAGTDDKPIIVVKYKDQEKRFVAEEISSMVLAKMREIAETFLESPRKATIDAGVIAGLNVMRIINEPTAAALAYGLQKRDNFAGKRNVFIFDLGGGTFDVSLVTIKDDIDTFEVKATAGDTHLGGEDFDNRMVNHFVQEFNRKNKVDINGNPRALRRLRTASEKAKRTLSFDSEATIEIDAICQVYGHFKKCMDIVERCLMDAKMDKSSVDDVVLVGGSSRIPKLQHPDEAVAYGAAVQAALLSDGIENVPNLVLLEVTPLSLGVATKGDLMEVMIPRNTAIPTKKELIYGTIEDNQSSVLVKVYEVERTKASDNNLLGLFNLSVPPAPRCLHIKVCFAIDADAEEIERMIEEAVNYKAEDMNYKKKVKVINTLDSYIYNMDEVMMDKGSSKLSPQDKNKINSAIMRGRDLLDNNQQEEVYVFENFLKELQSIYKSSMEKINNSCAYEESDDDY 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi3g00130 499 Pfam Hsp70 protein 16 388 IPR013126 GO:0005524|GO:0140662
Sebi3g00130 499 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 293 419 IPR029047 -
Sebi3g00130 499 Gene3D - 127 275 - -
Sebi3g00130 499 Gene3D - 16 301 - -
Sebi3g00130 499 PANTHER HEAT SHOCK PROTEIN 70KDA 18 449 IPR013126 GO:0005524|GO:0140662
Sebi3g00130 499 FunFam Heat shock cognate 71 kDa protein 169 238 - -
Sebi3g00130 499 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 302 389 IPR029047 -
Sebi3g00130 499 SUPERFAMILY Actin-like ATPase domain 8 123 IPR043129 -
Sebi3g00130 499 FunFam heat shock 70 kDa protein-like 20 74 - -
Sebi3g00130 499 ProSitePatterns Heat shock hsp70 proteins family signature 2. 135 148 IPR018181 -
Sebi3g00130 499 Coils Coil 385 405 - -
Sebi3g00130 499 SUPERFAMILY Actin-like ATPase domain 130 288 IPR043129 -
Sebi3g00130 499 Gene3D - 390 488 IPR029048 -
Sebi3g00130 499 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 416 489 IPR029048 -
Sebi3g00130 499 Gene3D Actin; Chain A, domain 4 172 242 - -
Sebi3g00130 499 FunFam Uncharacterized protein 100 123 - -
Sebi3g00130 499 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi3g00130 Sebi-Chr3 1929715 1931697 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi3g00130 1 478 Calmodulin-binding Proteins AT3G12580 52.295 0.0 552