Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi3g00127 ATGGAATCAAGGTATACAGCTATCACTCGAACAGTCTTTTTTCACTTGAAAGCGAATGGCCAAAAATATGAGGGACATGCGATAGGAATTGACCTTGGCACAACCTACTCACGTGTTGCAGTATGGCAGGAACAAAACAATCGAGCAGAGATCATCCACAATGAACAAGGAAACGGAACAACTCCTTCTTTTGTTGCTTTCACTGACACTTTAGATGCTGCCAAAAATCAGGCATTCACCAATCCAACCAACACTGTGTTTGATATAAAGAGGTTGATTGGAAAGAAATATAGTGATTTCATTATTCAAAACGATATAATGTTGTGGCCCTTTAAGGTGATTCCCGGTGCTAATGATAAACCTACTATCGTTGTTAAGTACAAGGGGGTAGAAAAGCACCTTTTTGCAGAGGAAATCTCATCTATGCTCTTTACAAAGATGAGAGAGATTGCAGAGGCATATTTGGCATCACCAGTAAAGAATGCTGTTATCACTGTGCCTGCTTATTTCAATGATTCTCAACGAAAAGCTACCAAAGATGCCGGTGCTATTGCTGGCCTCAATGTTATGAGGATAATCAATGAGCCTACTGCTGCTGCTCTTGCATATGACCTTCAAAACAGAGTTGATTTTTTTGGAGAAAGAAATGTTTTCATCTTTGATCTTAGTGGTGGCTCTTTTGATGTGTCTCTTCTCACAATTAAGGGTGATAGGTTCCAAGTAAAGGCCACCGCTGGAGATACTCACCTTGGAGGAGAGGTTTTTGATAATAGAATGGTGAACCACTTTGTGAAGGAGTTCAAGAGGAAGAACAGAGTTGACATCAGTTGGAACCCAAAAGCCCTGAGGAGGCTGAGAAGTGAATGTGAGAGGGCAAAAAGGGTACTTTCATATGATACTGAGACCACAATTGAAATAACTTCTTTATGTCCAGGAATTGATTTCTGTTCACCACTCACCCGTGCTAAATTTGAGCAACTTAACATGGACCTCTTTACAAAGTGCATAGAGACAGTTGAGCAGTGTCTCACTGATGCTAAGATGGATAAGAGTGATGTTGATGATGTTGTACTTGTTGGTGGCTCTTCTAGAATTCCCAAAGTGCAGCAGCTGTTGCAGGATTTTTTCAATGGGAAGGATCTGTGCATGAGCATCAACCCTGATGAGGCTGTGGTTTATGGTGCTGCTGTCCAAGCTGCTTTGTTGAATGATGACAATAAGAAGGCTAATGCAATTAATGCTTTGGATGATTATCTTTGCGATATTAAAAAAGTAATGAAGGATAAGTATGTCAGTTCTAAGGTTACTACAATGGACAAAATTAAGATCAATTCTGCATTTATAAATGGAAAAAATTTGATTGGTGGTAACCAGCAGGAAAATATGCATGTGTTTGTGGACTGTTTAAGGGAGCTTAAGAGTATATTTGAATCCGCTATGGACAAGGTCCACTTTGCTTGGTCTGATGAGGATGAGGATTACTAA 1485 0.3993 MESRYTAITRTVFFHLKANGQKYEGHAIGIDLGTTYSRVAVWQEQNNRAEIIHNEQGNGTTPSFVAFTDTLDAAKNQAFTNPTNTVFDIKRLIGKKYSDFIIQNDIMLWPFKVIPGANDKPTIVVKYKGVEKHLFAEEISSMLFTKMREIAEAYLASPVKNAVITVPAYFNDSQRKATKDAGAIAGLNVMRIINEPTAAALAYDLQNRVDFFGERNVFIFDLSGGSFDVSLLTIKGDRFQVKATAGDTHLGGEVFDNRMVNHFVKEFKRKNRVDISWNPKALRRLRSECERAKRVLSYDTETTIEITSLCPGIDFCSPLTRAKFEQLNMDLFTKCIETVEQCLTDAKMDKSDVDDVVLVGGSSRIPKVQQLLQDFFNGKDLCMSINPDEAVVYGAAVQAALLNDDNKKANAINALDDYLCDIKKVMKDKYVSSKVTTMDKIKINSAFINGKNLIGGNQQENMHVFVDCLRELKSIFESAMDKVHFAWSDEDEDY 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi3g00127 494 Gene3D - 208 382 - -
Sebi3g00127 494 PRINTS 70kDa heat shock protein signature 56 68 - -
Sebi3g00127 494 PRINTS 70kDa heat shock protein signature 162 182 - -
Sebi3g00127 494 PRINTS 70kDa heat shock protein signature 225 235 - -
Sebi3g00127 494 PRINTS 70kDa heat shock protein signature 385 405 - -
Sebi3g00127 494 PRINTS 70kDa heat shock protein signature 26 39 - -
Sebi3g00127 494 PRINTS 70kDa heat shock protein signature 353 369 - -
Sebi3g00127 494 Pfam Hsp70 protein 27 407 IPR013126 GO:0005524|GO:0140662
Sebi3g00127 494 Gene3D - 87 142 - -
Sebi3g00127 494 ProSitePatterns Heat shock hsp70 proteins family signature 1. 30 37 IPR018181 -
Sebi3g00127 494 PANTHER HEAT SHOCK PROTEIN 70KDA 27 417 IPR013126 GO:0005524|GO:0140662
Sebi3g00127 494 SUPERFAMILY Actin-like ATPase domain 214 402 IPR043129 -
Sebi3g00127 494 Gene3D Actin; Chain A, domain 4 251 334 - -
Sebi3g00127 494 FunFam Molecular chaperone DnaK 28 211 - -
Sebi3g00127 494 SUPERFAMILY Actin-like ATPase domain 26 205 IPR043129 -
Sebi3g00127 494 Gene3D - 28 400 - -
Sebi3g00127 494 Gene3D - 403 485 IPR029048 -
Sebi3g00127 494 ProSitePatterns Heat shock hsp70 proteins family signature 3. 356 370 IPR018181 -
Sebi3g00127 494 FunFam Heat shock cognate 70 kDa protein 2 335 382 - -
Sebi3g00127 494 FunFam Heat shock 70 kDa 251 334 - -
Sebi3g00127 494 FunFam heat shock 70 kDa protein-like 87 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi3g00127 Sebi-Chr3 1837233 1838965 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi3g00127 22 484 Calmodulin-binding Proteins AT5G02500 61.523 0.0 587