Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi3g00116 ATGGCCGGAAAAGGTGAGGGACCGGCGATCGGAATCGATCTTGGAACCACCTACTCCTGCGTTGGAGTGTGGCAGCACGATCGCGTCGAGATCATCGCCAATGATCAGGGGAACCGTACGACGCCGTCTTATGTTGCCTTCACCGACACCGAAAGATTGATAGGCGATGCAGCAAAGAACCAGGTCGCCATGAACCCAATCAACACCGTCTTTGATGCAAAGAGGTTGATTGGTAGGAGAATTAGCGACCCTTCTGTTCAGAGTGATATGAAGTTGTGGCCATTCAAAGTCGTTTCTGGTGCTGCTGAAAAACCCATGATTGTTGTTAACTACAAGGGTGAGGATAAGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTCCTAACAAAGATGCGTGAGATTGCAGAGGCTTACCTTGGCTCAACTGTGAAGAATGCTGTTGTTACTGTACCTGCTTACTTTAATGACTCTCAGCGTCAAGCTACCAAAGATGCTGGTGTTATTGCTGGCCTCAATGTCATGAGAATAATCAATGAGCCAACTGCTGCAGCTATTGCATATGGGCTTGACAAGAAAGCTACAAGTGTTGGGGAGAAGAATGTGCTGATCTTTGATCTCGGTGGTGGTACTTTTGATGTTTCTCTCCTCACCATTGAGGAGGGTATCTTTGAAGTTAAAGCCACAGCTGGAGACACTCATCTTGGAGGAGAAGACTTTGATAATAGAATGGTGAACCACTTTGTCCAGGAGTTCAAGAGGAAGAACAAAAAGGATATTACTGGAAACCCAAGAGCTCTCAGGAGGTTGAGAACTGCCTGTGAGAGAGCAAAGAGAACTCTCTCATCCACTGCTCAGACCACTATTGAGATAGATTCTCTGTATGAGGGCATTGACTTCTACTCAACAATCACTAGGGCTAGGTTTGAGGAACTCAACATGGACCTCTTCAGGAAGTGTATGGAGCCTGTGGAGAAGTGTCTTAGGGATGCAAAGATGGACAAGAGCACTGTTCATGATGTTGTCCTTGTTGGTGGCTCTACTAGGATTCCCAAGGTTCAGCAACTGTTGCAGGACTTCTTCAATGGGAAGGATCTGTGTAAGAACATTAACCCTGATGAAGCTGTTGCTTATGGTGCTGCTGTCCAGGCAGCTATATTGAGTGGTGAAGGCAATGAGAAGGTTCAAGATTTGTTGCTTTTGGATGTCACCCCCATTGTCTCTGGGTTTAGAGACTGCTGGAGGTATAACCAACCTGGTGTCTTGATTCAAGTTTATGAGGGTGAGAGAACAAGAACTAGGGATAACAACTTGTTGGGTAAGTTTGAGCTTTCAGGCATTCCTCCAGCTCCTCGTGGTGTTCCTCAAATCACTGTTTGCTTTGATATTGATGCTAATGGTATCTTGAATGTCTCTGCCGAGGACAAAACAACGGGGCAGAAAAACAAGATCACCATTACCAATGACAAAGGAAGATTGTCTAAGGAAGAAATTGAGAAGATGGTTCAAGAAGCAGAGAAATACAAGTCTGAAGATGAGGAGCACAAGAAGAAGGTAGAGGCAAAGAATGCCTTGGAGAACTATGCATACAACATGAGAAACACTATAAAGGATGAGAAGATCAGTTCAAAGCTTTCCTCAGAAGACAAGACAAAGATAGATAATGCAATTGAGCAGGCCATTCAATGGCTTGATGCCAATCAACTTGCTGAATCTGATGAATTTGAAGACAAGATGAAGGAGCTTGAGAGCATATGTAATCCTATTATAGCCAAGATGTACCAAGGTGGGGCTGCTGCAGGAGCAGGAGGTGACGTGGATGATGATGCTCCACCTGCCAGTGGTAGTGGTGCTGCCCCCAAGATTGAGGAGGTTGATTAA 1878 0.4537 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRISDPSVQSDMKLWPFKVVSGAAEKPMIVVNYKGEDKQFAAEEISSMVLTKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDITGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKDLCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPIVSGFRDCWRYNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDEKISSKLSSEDKTKIDNAIEQAIQWLDANQLAESDEFEDKMKELESICNPIIAKMYQGGAAAGAGGDVDDDAPPASGSGAAPKIEEVD 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi3g00116 625 Pfam Hsp70 protein 414 594 IPR013126 GO:0005524|GO:0140662
Sebi3g00116 625 Pfam Hsp70 protein 9 409 IPR013126 GO:0005524|GO:0140662
Sebi3g00116 625 FunFam Heat shock 70 kDa protein 412 521 - -
Sebi3g00116 625 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Sebi3g00116 625 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Sebi3g00116 625 Gene3D - 71 126 - -
Sebi3g00116 625 Gene3D - 10 384 - -
Sebi3g00116 625 PRINTS 70kDa heat shock protein signature 58 66 - -
Sebi3g00116 625 PRINTS 70kDa heat shock protein signature 369 389 - -
Sebi3g00116 625 PRINTS 70kDa heat shock protein signature 453 469 - -
Sebi3g00116 625 PRINTS 70kDa heat shock protein signature 209 219 - -
Sebi3g00116 625 PRINTS 70kDa heat shock protein signature 36 48 - -
Sebi3g00116 625 PRINTS 70kDa heat shock protein signature 146 166 - -
Sebi3g00116 625 PRINTS 70kDa heat shock protein signature 337 353 - -
Sebi3g00116 625 PRINTS 70kDa heat shock protein signature 396 415 - -
Sebi3g00116 625 PRINTS 70kDa heat shock protein signature 8 21 - -
Sebi3g00116 625 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 411 520 IPR029047 -
Sebi3g00116 625 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 519 600 IPR029048 -
Sebi3g00116 625 FunFam Heat shock 70 kDa protein 515 625 - -
Sebi3g00116 625 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 525 IPR029047 -
Sebi3g00116 625 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Sebi3g00116 625 MobiDBLite consensus disorder prediction 596 625 - -
Sebi3g00116 625 PANTHER HEAT SHOCK PROTEIN 70KDA 9 559 IPR013126 GO:0005524|GO:0140662
Sebi3g00116 625 Gene3D Actin; Chain A, domain 4 235 318 - -
Sebi3g00116 625 SUPERFAMILY Actin-like ATPase domain 198 388 IPR043129 -
Sebi3g00116 625 FunFam Heat shock cognate 70 kDa protein 2 319 366 - -
Sebi3g00116 625 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Sebi3g00116 625 FunFam Heat shock protein 70 10 196 - -
Sebi3g00116 625 Coils Coil 497 517 - -
Sebi3g00116 625 Gene3D - 521 595 IPR029048 -
Sebi3g00116 625 FunFam Heat shock 70 kDa protein 71 126 - -
Sebi3g00116 625 Gene3D - 192 366 - -
Sebi3g00116 625 FunFam Heat shock 70 kDa protein 197 260 - -
Sebi3g00116 625 FunFam Heat shock 70 kDa 235 318 - -
Sebi3g00116 625 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi3g00116 Sebi-Chr3 1662722 1665134 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi3g00116 1 625 Calmodulin-binding Proteins AT3G12580 86.462 0.0 1137