Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi3g00089 ATGGCAAAAAAATATGAGGGACCTGCAATAGGAATTGACCTTGGCACTACCTACTCATGTGTTGCAGTATGGCAGGAACAAAACAATAGGGCAGAGATCATCCACAATGAACAAGGAAACAGAACCACTCCTTCTTTTGTTGCTTTCACCAATGAACAAAGGTTGATTGGTGATGCTGCCAAAAATCAGGCTGCTGGCAATCCAGCAAACACTGTCTTTGATGCAAAGAGATTGATTGGAAGAAAATATAGTGACCCCATTATTCAGAATGATTTAAAGCTGTGGCCTTTTAAGGTCATTGCTGGTACTGATGATAAACCTATTATTGTTGTCAAGTACAAGGGTGAGGAAAAGCACTTTGTTGCTGAGGAAATCTCATCTATGATCCTTACAAAGATGCGGGAAATTGCAGACACATTCCTGGAGTCAGATGTAAAGAATGCAGTTGTTACTGTGCCTGCTTATTTCAATGACTCTCAGCGTCAAGCTACCAAAGATGCTGGTGCCATTGCTGGCCTCAATGTTATGAGGATAATCAATGAACCTACTGCTGCAGCACTAGCATATGGCCTTCAAAAGAGAGCTAATATTGTTGGGAAGAGAAATGTTTTCATCTTTGATCTTGGTGGTGGCACTTTTGATGTGTGTCTTCTTACAATTAAGGATGATAGGTTCCAAGTAAAGGCCACTGCTGGAGATACTCACCTTGGAGGAGAGGACTTTGATAATAGGATGGTGAACTATTTTGTAGAGGAGTTCAAGAGGAAGAAGAAAGTGGACATTAGTGGGAACTCAAGCGCCCTGAGGAGGTTGAGAACTGTGTGTGAGAGGGCAAAAAGGACACTTTCATATGATACTGAGACCACACTTGAGATAGATGGTGTATGCAAAGGTCTTGACTTCTATTCATCCCTTACTCGGGCAAGGTTTGAGAAACTCAACATGGAACTCTTTACTAAGTGTATGGAGATTGTTGAAAGGTGTCTTATTGATGCTAAGATGGAGAAGAGTGATGTAGATGATGTTGTCCTTGTTGGTGGCTCTTCTAGGATTCCAAAAGTGCAGCAGCTTTTGCAGGACTATTTCAAGGGAAAGGATCTTTGCAAGAGCATCAACCCTGATGAGGCTGTTGCTTATGGTGCTGCTGTCCAGGCTGCTTTGTTGAGTAAAGGCACTAAGTTTGTTTCAAACCTTGTGTTATTGGATGTTACACCTCTGTCTCTTGGTATAGACACAAAAGGAGATCTGATGGATGTAGTGATTCCTAGGAATACTACCATTCCTGCAGAGAAAAGTAAAGTGTACTTCACGGCGGCAGATTACCAATCTACAGCCGGGATTTATGTTTATGAAGGTGAGAGGACAAGAGCTAGTGATAACAACTTGTTGGGTTTGTTTAAGCTTTCAGTTCCTCCTGCTCCTCGAGGCCTTCCTTTCAATGTATGCTTTGTAATAGATGCTGATGGCATATTAAATGTCTCTGCTAAGGAAAAAACCACTGGCAATAAGAAAGAGATTACCATAAGGAATGAAGGTGGAAGATTGTCATCTGAAGAAATTGAGAGAATGATTCAGGAAGCTGAGTACTACAGGGCTGAAGATATGAAGTTCAAGAAGAAAGCCAAAGCAATGAATGCTTTAGATGATTATCTTTATGATATGGGGAAAGTTATAAAGGATAAGTGTGTTAGTTCTATGCTTCGCCCACATGACAGATTGAAGATCAACTCTGGAATTATAAAAGGCAAATCTTTGCTTGATGGCAATCAGCAGGGAGAAACACATGTGTTTGTGGACTTTTTGAAGGAGCTTGAGAATCTTTGA 1824 0.4106 MAKKYEGPAIGIDLGTTYSCVAVWQEQNNRAEIIHNEQGNRTTPSFVAFTNEQRLIGDAAKNQAAGNPANTVFDAKRLIGRKYSDPIIQNDLKLWPFKVIAGTDDKPIIVVKYKGEEKHFVAEEISSMILTKMREIADTFLESDVKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAALAYGLQKRANIVGKRNVFIFDLGGGTFDVCLLTIKDDRFQVKATAGDTHLGGEDFDNRMVNYFVEEFKRKKKVDISGNSSALRRLRTVCERAKRTLSYDTETTLEIDGVCKGLDFYSSLTRARFEKLNMELFTKCMEIVERCLIDAKMEKSDVDDVVLVGGSSRIPKVQQLLQDYFKGKDLCKSINPDEAVAYGAAVQAALLSKGTKFVSNLVLLDVTPLSLGIDTKGDLMDVVIPRNTTIPAEKSKVYFTAADYQSTAGIYVYEGERTRASDNNLLGLFKLSVPPAPRGLPFNVCFVIDADGILNVSAKEKTTGNKKEITIRNEGGRLSSEEIERMIQEAEYYRAEDMKFKKKAKAMNALDDYLYDMGKVIKDKCVSSMLRPHDRLKINSGIIKGKSLLDGNQQGETHVFVDFLKELENL 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi3g00089 607 Pfam Hsp70 protein 9 589 IPR013126 GO:0005524|GO:0140662
Sebi3g00089 607 FunFam Heat shock 70 kDa protein 73 128 - -
Sebi3g00089 607 Gene3D Actin; Chain A, domain 4 237 320 - -
Sebi3g00089 607 PANTHER HEAT SHOCK PROTEIN 70KDA 9 562 IPR013126 GO:0005524|GO:0140662
Sebi3g00089 607 FunFam Heat shock 70 kDa 237 320 - -
Sebi3g00089 607 Gene3D - 73 128 - -
Sebi3g00089 607 Gene3D - 194 368 - -
Sebi3g00089 607 ProSitePatterns Heat shock hsp70 proteins family signature 3. 342 356 IPR018181 -
Sebi3g00089 607 Gene3D - 515 607 IPR029048 -
Sebi3g00089 607 SUPERFAMILY Actin-like ATPase domain 9 193 IPR043129 -
Sebi3g00089 607 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 385 513 IPR029047 -
Sebi3g00089 607 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 395 548 IPR029047 -
Sebi3g00089 607 SUPERFAMILY Actin-like ATPase domain 200 389 IPR043129 -
Sebi3g00089 607 Gene3D - 10 384 - -
Sebi3g00089 607 FunFam Heat shock 70 kDa protein 391 544 - -
Sebi3g00089 607 PRINTS 70kDa heat shock protein signature 38 50 - -
Sebi3g00089 607 PRINTS 70kDa heat shock protein signature 397 416 - -
Sebi3g00089 607 PRINTS 70kDa heat shock protein signature 339 355 - -
Sebi3g00089 607 PRINTS 70kDa heat shock protein signature 371 391 - -
Sebi3g00089 607 PRINTS 70kDa heat shock protein signature 8 21 - -
Sebi3g00089 607 PRINTS 70kDa heat shock protein signature 60 68 - -
Sebi3g00089 607 PRINTS 70kDa heat shock protein signature 211 221 - -
Sebi3g00089 607 PRINTS 70kDa heat shock protein signature 476 492 - -
Sebi3g00089 607 PRINTS 70kDa heat shock protein signature 148 168 - -
Sebi3g00089 607 FunFam Heat shock protein 70 10 200 - -
Sebi3g00089 607 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi3g00089 Sebi-Chr3 1253249 1255184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi3g00089 1 607 Calmodulin-binding Proteins AT3G12580 69.180 0.0 852