Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi3g00086 ATGGCAAATTATTTGATGTTTCTTTCTCGTGGTGATCAATTTGAAGGCAGCAGCAGTAGCACCTCCTATAACAGTCGTGTGTTTGAATGCAAGACATGTAATAGGCAATTCCCTTCATTTCAAGCACTTGGTGGACACAGGGCTAGTCACAAGAAGCCAAGGTTGGTGGCAGAGAATGGAGACATGATGATGGATGGCCTTGTTGGTTCACCACCAAAGCCTAAAACTCATGAGTGTTCCATTTGTGGGTTGGAGTTTGCAATAGGACAAGCCTTGGGTGGTCACATGAGGAGGCACAGAGCTGCAAATTTGAATGGAAACATCACTATGAGTAATAGTAGTGGTGGTGGTGGTAGCAGCAGTCTTGATTCTTCATCACCAAACATGAAAGCTGCTGGTAGCAACAAAAGATCATCATCAGTTTTGGCTTTGGATTTGAATTTGACACCCTTTGAGAATGATTTGGAGTTTTTGAAGATTGGAAAGCCAACTGCCTTGGGTGATTATTTGTATTGA 516 0.4283 MANYLMFLSRGDQFEGSSSSTSYNSRVFECKTCNRQFPSFQALGGHRASHKKPRLVAENGDMMMDGLVGSPPKPKTHECSICGLEFAIGQALGGHMRRHRAANLNGNITMSNSSGGGGSSSLDSSSPNMKAAGSNKRSSSVLALDLNLTPFENDLEFLKIGKPTALGDYLY 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi3g00086 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 28 55 IPR013087 -
Sebi3g00086 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 104 IPR013087 -
Sebi3g00086 171 SUPERFAMILY beta-beta-alpha zinc fingers 26 99 IPR036236 -
Sebi3g00086 171 PANTHER ZINC FINGER PROTEIN ZAT5 1 153 - -
Sebi3g00086 171 Pfam C2H2-type zinc finger 27 53 - -
Sebi3g00086 171 Pfam C2H2-type zinc finger 77 101 - -
Sebi3g00086 171 SMART c2h2final6 77 99 IPR013087 -
Sebi3g00086 171 SMART c2h2final6 28 50 IPR013087 -
Sebi3g00086 171 Gene3D Classic Zinc Finger 25 99 - -
Sebi3g00086 171 ProSitePatterns Zinc finger C2H2 type domain signature. 30 50 IPR013087 -
Sebi3g00086 171 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Sebi3g00086 171 MobiDBLite consensus disorder prediction 106 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi3g00086 Sebi-Chr3 1224044 1224559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi3g00086 1 158 C2H2 Transcription Factor Family AT2G37430 45.963 7.04e-38 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi3g00086 zf-C2H2_6 8.3e-10 CL0361