Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi3g00082 ATGGCAATCTATAGAATTGCAATTGGGTCTCCAGGAGAGGCTGGCCAGCCTGATGCAATTAGAGCAGCATTTGCAGAATTCTTCTCCATGTTGATTTTTGTTTTTGCTGGCCAAGGGTCTGGCATGGCTTACAGCAAAATTACCAACAATGGACCTGCAACACCTGCTGGTCTCATAGTTGCATCACTATCTCATGCATTTGGACTTTTTGTGGCTGTTTCTGTTGGGGCAAACGTTTCTGGTGGTCATGTGAACCCTGCAGTCACATTTGGTGCCTTCATAGGAGGAAACATAACCCTGCTGAGAAGCATTTTGTATTGGATTGCCCAGTTGCTTGGTTCAGTTGTTGCTTGCATTCTTCTTAAGTCTGCTACTGGTGGAATGGAAACATCAGCTTTTGCTCTATCCTCTGGTGTCTCTGTCTGGAATGCACTAGTTTTTGAAATTGTGATGACTTTTGGCTTGGTATATACAGTTTATGCCACAGCAGTAGACCCAAAGAAAGGGAATGTGGGCATTGTTGCCCCAATTGCAATTGGTTTTATTGTGGGTGCTAATATCTTAGTTGGTGGTGCTTTTGATGGTGCATCCATGAACCCAGCTGTGTCCTTCGGCCCTGCTGTGGTTAGCTGGTCATGGACCCATCACTGGGTCTATTGGGTTGGCCCATTCATTGGTGCAGCAATTGCTGCCATTATCTATGATAACATCTTCATTGGTGATGATGGTCATGAACCTCTTTCAAGCAGTGATTTCTAG 759 0.4493 MAIYRIAIGSPGEAGQPDAIRAAFAEFFSMLIFVFAGQGSGMAYSKITNNGPATPAGLIVASLSHAFGLFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRSILYWIAQLLGSVVACILLKSATGGMETSAFALSSGVSVWNALVFEIVMTFGLVYTVYATAVDPKKGNVGIVAPIAIGFIVGANILVGGAFDGASMNPAVSFGPAVVSWSWTHHWVYWVGPFIGAAIAAIIYDNIFIGDDGHEPLSSSDF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi3g00082 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
Sebi3g00082 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi3g00082 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi3g00082 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi3g00082 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi3g00082 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi3g00082 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi3g00082 252 SUPERFAMILY Aquaporin-like 17 240 IPR023271 -
Sebi3g00082 252 PANTHER AQUAPORIN-8 6 246 IPR034294 -
Sebi3g00082 252 FunFam Probable aquaporin TIP1-1 4 251 - -
Sebi3g00082 252 Pfam Major intrinsic protein 16 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi3g00082 252 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi3g00082 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi3g00082 Sebi-Chr3 1178822 1180378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi3g00082 1 252 Major Intrinsic Protein MIP AT4G01470 85.317 7.44e-156 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi3g00082 K09873 - gmx:100788583 465.692