Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi3g00081 ATGATGATATCGAGGGGATTGTTCGGGTGGTCCCCGCCGCACGTGCAGCCGCTGACGCCGGTTTCGGAGGTGTCAGAGCCGCCGGAGTCGCCGTCACCCTACCTGGACCTCGGCGCCGAGACCTCCGCGTCGCAGCAGGTGGAAGTCGAGGAAGATATGGAGGAACCGGAGGAGATCGAGCCGCCGCCAGCTGCGGTTCCTTTCTCGCGGCTCTTTAAATGCGCCGACCGGTTCGATTGGTTCCTCATGGCCGTCGGTTCCATCGCCGCCGCGGCTCACGGTACCGCGCTCGTTGTTTACTTGCACTACTTCGCTAAGATCATCCATGTTCTGCGGATGGATCCGCAAAAGCAGCAGGAGCAGTTTGACAGGTTCACAGAGCTTGCTTTAACCATTGTTTATATTGCTGTGGGAGTTTTTGCTGCTGGTTGGATTGAGGTTTCATGTTGGATCTTGACTGGAGAACGACAGACTGCTGTCATCAGGTCCAAATATGTTCAAGTATTACTAAATCAGGATATGAGTTTTTTTGATACTTATGGGAATAACGGAGACATTGTGAGTCAAGTATTGAGTGACGTGCTGCTTATCCAGTCCGCCCTTAGTGAAAAAGTTGGAAATTATATTCATAATATGGCTACATTCTTCAGTGGTCTTGTCATTGGCCTTATCAATTGTTGGCAGATAGCTTTGATAACGTTAGCCACGGGTCCTTTTATTGTTGCTGCTGGAGGAATATCAAATATATTCCTCCATAGGCTTGCAGAGAATATCCAAGATGCATATGCTGAAGCAGCTAGCATTGCTGAACAGGCAGTTTCCTATATCAGGACATTGTATGCATTTACAAATGAAACATTGGCCAAGTACTCATATGCAACATCACTCCAAGCTACTCTTAGATATGGTATATTAATAAGTCTTGTTCAAGGGCTTGGTCTTGGATTTACGTATGGGCTTGCAATATGTTCTTGTGCATTACAACTCTGGGTTGGAAGATTCTTGGTTATTCATGAAAAAGCGCATGGTGGTGAAATTATAACAGCCCTGTTCGCTGTAATTCTAAGTGGCCTGGGATTGAATCAAGCAGCAACGAATTTCTATTCATTTGATCAAGGGAGAATAGCTGCTTATAGGCTATTTGAGATGATAAGCCGGTCATCCTCATCTGTTAATCATGATGGCACTACACCTGATTCTGTGCAAGGAAATATAGAGTTTCGAAATGTTTACTTCAGCTATCTGTCTCGTCCTGAAATCCCTATCTTGAGTGGATTTTATCTCACTGTACCTTCTAAGAAAGCTGTAGCACTTGTTGGCAGAAATGGCTCTGGAAAAAGTAGTATTATTCCACTCATGGAGCGTTTTTATGATCCTACATTAGGTGAAGTTCTTCTAGATGGAGAAAACATCAAGAATTTGAAACTGGAATGGCTGAGGAGCCAAATAGGACTAGTCACCCAGGAGCCTGCTTTGCTCAGTTTGAGTATAAGAGACAACATTGCTTATGGGAGGGATGTCACCATGGATCAAATTGAAGAGGCTGCTAAAATAGCTCATGCACATACGTTTATCAGCTCATTAGAGAAAGGTTATGACACACAGGTTGGCAGGGCTGGTCTAGATTTGACTGAAGAACAGAAAATAAAACTTTCTATTGCAAGAGCTGTGCTTCTAAATCCATCAATTCTTCTACTTGATGAGGTTACTGGTGGACTTGATTTTGAGGCTGAGAGGGCTGTTCAGGAGTCTCTTGATCTGCTTATGTTGGGACGCTCAACAATAATAATTGCTCGGAGGCTTAGTCTCATAAGGAACGCTGATTATATAGCTGTTATGGAGGAAGGTCAACTTGTTGAAATGGGTACCCATGATGAATTGTTGACCCTGGATGGCTTATATGCTGAGCTTCTTCGATGTGAAGAGGCAGCAAAACTTCCCAAGAGGATGCCTGTTCGAAACTACAAGCAGACTGCAGCATTCCAAATAGAGAAGGATTCTTCAGCAAGTCATAGTTTCAATGAACCATCATCCCCTAAAATGATGAAGTCACCCTCTCTTCAAAGAATTTCTAATGTATCAAGACCTCGAGATGGCATCTTTAACTTGCAAGAATCACCTAAAGTCAGGAGTCCACCACCTGAAAAGATGCTGGAAAATGGTCAGGCTTTGGATGCACCTGATAAGGAACCATCAATAAGAAGGCAGGATAGTTTTGAAATGAGACTGCCAGAGTTACCCAAAATTGATGTACAATCTGTGCATCGACAAAAATCAAATGATTCTGACCCAGAATCCCCTGTTTCACCTCTTCTAACATCTGATCCTAAAAGTGAACGCTCACATTCACAGACTTTTAGCAGACCACATAGTCATTCTGATGACGCTTCAGTTACAATGAGAGAAAAAAAGGATGCACGGCATCGAAAACCACCATCACTTCAGAAGCTTGCTGAGCTTAGTTTTACTGAGTGGCTTTATGCTGTGTTAGGAAGCATAGGTGCTGCTATCTTTGGTTCTTTCAATCCCCTTCTTGCTTATGTTATTGGCCTTGTGGTGACAGCTTACTATAATATTGATAAGCAGCATCACTTAGAACGGGAGGTAGACAGGTGGTGCTTGATCATTGGCTGCATGGGTATTGTAACAGTTATTGCCAACTTTTTGCAGCATTTCTACTTTGGTATCATGGGAGAGAAAATGACAGAAAGAGTTAGGAGAATGATGTTCTCAGCCATGCTACGCAATGAAGTCGGATGGTTTGATGATGAGGAAAACAGTGCTGACAATTTATCCATGCGATTGGCCAATGATGCTACTTTTGTACGAGCTGCATTTAGCAACCGGCTTTCCATATTTATACAGGACAGTGCCGCAGTTATTGTTGGTCTTCTCATTGGTGTTTTGCTGCACTGGCGGTTAGCACTTGTGGCTTTTGCAACCCTTCCGATTCTCTGTATTTCTGCATTTGCCCAGAAGTTGTGGCTAGCTGGATTTTCAAGGGGCATACAGGAAATGCACAGAAAGGCATCTTTGGTTCTTGAAGATGCAGTCAGAAACATATACACTGTAGTTGCATTTTGTGCTGGCAATAAGGTAATGGAGCTCTATAGGCTGCAGTTAAAGAAAATATTTAAGCAGAGCTTTCTTCATGGGATGGCAATTGGTTTCGCATTCGGATTTTCACAGTTTCTACTTTTTGCTTGTAATGCCCTTCTACTTTGGTACACTGCGATATGTATAAAAAATGGTTACATGAATCCACCTACTGCGCTCAAGGAGTACATGGTTTTCTCATTTGCTACATTTGCACTTGTGGAGCCTTTTGGATTGGCTCCTTACATACTTAAACGGAGAAAATCTCTCATATCAGTGTTTGAAATTATAGATCGTGTGCCTAAAATTGATCCTGATGATAGCTCAGCATTGAAGCCACCCAATGTATATGGGAGCATTGAGTTAAAAAATGTTGATTTTTGTTACCCATCTCGACCTGAATTGTTGGTATTGAGCAATTTTAGTCTCAAAGTCAATGGGGGCCAAACAGTTGCTATTGTGGGAGTTTCAGGGTCAGGAAAAAGCACTATAATATCTTTGATTGAGAGATTTTATGATCCAGTTGCGGGGCAAGTTTTACTGGATGGGAGGGATTTAAAGCTTTATAACTTGAGATGGTTGAGGAGCCACCTTGGTCTGGTTCAGCAGGAGCCTATTATCTTCTCAACAACAATAAGGGAAAACATTATATATGCAAGGCATAATGCCAGTGAAGCTGAGATGAAAGAGGCTGCAAGAATAGCAAATGCTCATCATTTCATTAGCAGCTTGCCTCATGGTTATGACACTCACGTAGGGATGAGAGGTGTTGATTTAACCCCAGGACAAAAACAGAGAATTGCAATTGCAAGGGTGGTGCTGAAAAATGCACCTATCTTATTGTTGGATGAAGCGAGTTCATCAATTGAATCTGAGTCAAGCCGAGTAGTACAAGAGGCTCTAGACACACTAATAATGGGAAACAAGACCACTATTTTAATAGCTCATAGAGCTGCAATGATGAGGCATGTGGACAATATTGTAGTGCTTAATGGAGGACGGATAGTGGAGGAGGGCAGTCATGATTCATTGGTGGCAAAGAATGGTCTGTATGTCCGATTGATGCAACCTCATTTTGTTGAATCACTGGTGACTTGTGCACCTGATGGATTTTTCCAAGAATGTCAAGTGGAAATTATGGGTGGCAATGTAATGATGGAGCTTGGATTAGCACTCGGCATTGGTAGGCATAGGAAGAGAATACTTTAG 4305 0.4283 MMISRGLFGWSPPHVQPLTPVSEVSEPPESPSPYLDLGAETSASQQVEVEEDMEEPEEIEPPPAAVPFSRLFKCADRFDWFLMAVGSIAAAAHGTALVVYLHYFAKIIHVLRMDPQKQQEQFDRFTELALTIVYIAVGVFAAGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIGLINCWQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVIHEKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSSSSVNHDGTTPDSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPSKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDVTMDQIEEAAKIAHAHTFISSLEKGYDTQVGRAGLDLTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQESLDLLMLGRSTIIIARRLSLIRNADYIAVMEEGQLVEMGTHDELLTLDGLYAELLRCEEAAKLPKRMPVRNYKQTAAFQIEKDSSASHSFNEPSSPKMMKSPSLQRISNVSRPRDGIFNLQESPKVRSPPPEKMLENGQALDAPDKEPSIRRQDSFEMRLPELPKIDVQSVHRQKSNDSDPESPVSPLLTSDPKSERSHSQTFSRPHSHSDDASVTMREKKDARHRKPPSLQKLAELSFTEWLYAVLGSIGAAIFGSFNPLLAYVIGLVVTAYYNIDKQHHLEREVDRWCLIIGCMGIVTVIANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDDEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVGLLIGVLLHWRLALVAFATLPILCISAFAQKLWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFKQSFLHGMAIGFAFGFSQFLLFACNALLLWYTAICIKNGYMNPPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSALKPPNVYGSIELKNVDFCYPSRPELLVLSNFSLKVNGGQTVAIVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRSHLGLVQQEPIIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGSHDSLVAKNGLYVRLMQPHFVESLVTCAPDGFFQECQVEIMGGNVMMELGLALGIGRHRKRIL 1434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi3g00081 1434 CDD ABC_6TM_Pgp_ABCB1_D1_like 83 380 - -
Sebi3g00081 1434 MobiDBLite consensus disorder prediction 744 762 - -
Sebi3g00081 1434 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 405 640 IPR003439 GO:0005524
Sebi3g00081 1434 FunFam ABC transporter B family member 6 769 997 - -
Sebi3g00081 1434 MobiDBLite consensus disorder prediction 763 780 - -
Sebi3g00081 1434 Pfam ABC transporter 1170 1318 IPR003439 GO:0005524
Sebi3g00081 1434 Gene3D - 395 642 IPR027417 -
Sebi3g00081 1434 Gene3D ABC transporter type 1, transmembrane domain 70 657 IPR036640 GO:0005524|GO:0016020
Sebi3g00081 1434 PANTHER ABC TRANSPORTER B FAMILY 48 642 IPR039421 -
Sebi3g00081 1434 Pfam ABC transporter transmembrane region 86 355 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi3g00081 1434 Pfam ABC transporter transmembrane region 834 1098 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi3g00081 1434 CDD ABC_6TM_Pgp_ABCB1_D2_like 824 1135 - -
Sebi3g00081 1434 FunFam ABC transporter B family member 20 1142 1391 - -
Sebi3g00081 1434 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 829 1121 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi3g00081 1434 MobiDBLite consensus disorder prediction 665 699 - -
Sebi3g00081 1434 FunFam ABC transporter B family member 20 395 642 - -
Sebi3g00081 1434 MobiDBLite consensus disorder prediction 781 812 - -
Sebi3g00081 1434 Gene3D ABC transporter type 1, transmembrane domain 1001 1149 IPR036640 GO:0005524|GO:0016020
Sebi3g00081 1434 Gene3D ABC transporter type 1, transmembrane domain 768 995 IPR036640 GO:0005524|GO:0016020
Sebi3g00081 1434 FunFam ABC transporter B family member 6 999 1149 - -
Sebi3g00081 1434 Gene3D - 1150 1392 IPR027417 -
Sebi3g00081 1434 FunFam ABC transporter B family member 20 70 407 - -
Sebi3g00081 1434 Coils Coil 251 271 - -
Sebi3g00081 1434 SUPERFAMILY ABC transporter transmembrane region 69 380 IPR036640 GO:0005524|GO:0016020
Sebi3g00081 1434 SMART AAA_5 1179 1366 IPR003593 GO:0016887
Sebi3g00081 1434 SMART AAA_5 432 611 IPR003593 GO:0016887
Sebi3g00081 1434 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1141 1389 IPR027417 -
Sebi3g00081 1434 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 84 372 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi3g00081 1434 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1152 1389 IPR003439 GO:0005524
Sebi3g00081 1434 MobiDBLite consensus disorder prediction 744 812 - -
Sebi3g00081 1434 Pfam ABC transporter 426 570 IPR003439 GO:0005524
Sebi3g00081 1434 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 394 639 IPR027417 -
Sebi3g00081 1434 MobiDBLite consensus disorder prediction 665 731 - -
Sebi3g00081 1434 MobiDBLite consensus disorder prediction 18 60 - -
Sebi3g00081 1434 SUPERFAMILY ABC transporter transmembrane region 816 1137 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi3g00081 Sebi-Chr3 1166120 1176248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi3g00081 53 694 Calmodulin-binding Proteins AT2G36910 43.231 5.07e-169 540