Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi3g00054 ATGACAGCGGCACTTCTTGGAAGTAAGGAAAAGACTTCTGGAGGACAAATATGTGGCAACATGACATCTGGAGGGACTGAAAGTATATTATTAGCTGTTAAATCATCTCGTGACTACATGAAATCTAAGAAAGGAATTACAAGACCTGAAATGATAATTCCTGTGTCTGCACACTCAGCATATGACAAGGCTGCACAGTATTTTAATATCAAACTTTGGCGTGTTCCAGTTAACAAAAATTTTCAAGCAGATGTGAAAGCAATTAGGCGTCATATTAACAAAAATACCATTTTGATTGTTGGATCTGCTCCTGGTTTTCCTCATGGAATAATTGACCCCATTGAGGAACTTGGTCACCTAGCATCAAGCTTTGGTATTTGTTTCCATGTGGACCTTTGCCTTGGTGGCTTTGTATTACCTTTTGCTCGTGAGCTTGGGTACCACATTCCACCTTTTGATTTTTCTGTTAAAGGGGTTTCTTCAATATCTGTGGATGTGCATAAATATGGTTTAGCTCCCAAAGGAACAAGCATAGTTCTATACAGGAACCATGAAATCAGAAAGCATCAATTTGTTGCTGTTACTGAATGGTCCGGTGGGTTTTATGTGTCTCCAACCATAGCTGGAAGCAGGCCTGGAAGCCTAATTGCTGGTGCATGGGCAGCAATGATGTCCCTAGGCAAAGAAGGTTACTTGGAAAATACAAAAGCAATTATGGAAGGATCAAAAAGACTGCAGAAAGGCATAGAGGAGATTGCTGAGTTGTTTATCGTTGGAAGACCCGATATGACTATCGTTGCTTTTGGATCTGCTGTTCTGGATATATTTGAAGTCAATGATATTATGTCATCCAAAGGGTGGCATTTGAATGCATTGCAGAGACCCAACAGCATCCATATCTGTGTGACACTACAACATGTACCAGTTGTTGAAGACTTTCTAAGGGATTTAAAGGAATCTGTGAAAACTGTGAAAGAAAATCCCGGTCCAATAAGTGGAGGCCTGGCACCTATATATGGCGCCGCAGGGAAGATGCCAGATAGAGGCATGGTCCAGGAATTGCTGGTAGATTTTATGGACGGTACCTGCTAG 1092 0.413 MTAALLGSKEKTSGGQICGNMTSGGTESILLAVKSSRDYMKSKKGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVNKNFQADVKAIRRHINKNTILIVGSAPGFPHGIIDPIEELGHLASSFGICFHVDLCLGGFVLPFARELGYHIPPFDFSVKGVSSISVDVHKYGLAPKGTSIVLYRNHEIRKHQFVAVTEWSGGFYVSPTIAGSRPGSLIAGAWAAMMSLGKEGYLENTKAIMEGSKRLQKGIEEIAELFIVGRPDMTIVAFGSAVLDIFEVNDIMSSKGWHLNALQRPNSIHICVTLQHVPVVEDFLRDLKESVKTVKENPGPISGGLAPIYGAAGKMPDRGMVQELLVDFMDGTC 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi3g00054 363 FunFam Sphingosine-1-phosphate lyase 1 216 326 - -
Sebi3g00054 363 Gene3D - 1 227 IPR015421 GO:0003824
Sebi3g00054 363 Gene3D Aspartate Aminotransferase, domain 1 228 326 IPR015422 GO:0003824
Sebi3g00054 363 Pfam Pyridoxal-dependent decarboxylase conserved domain 16 268 IPR002129 GO:0016830|GO:0019752|GO:0030170
Sebi3g00054 363 PANTHER - 1 363 - -
Sebi3g00054 363 FunFam sphingosine-1-phosphate lyase 1 1 227 - -
Sebi3g00054 363 Gene3D - 327 360 - -
Sebi3g00054 363 FunFam Sphingosine-1-phosphate lyase 1 323 362 - -
Sebi3g00054 363 SUPERFAMILY PLP-dependent transferases 13 326 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi3g00054 Sebi-Chr3 805890 810295 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi3g00054 22 321 Calmodulin-binding Proteins AT5G17330 26.498 4.96e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi3g00054 K01634 - gmx:100794743 709.523