Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi3g00049 ATGACAAGTTTTCAGCCTCACTGGTCATTTTTAACTTTGCTGATTTCAGTTTCCTATTTGCTGAATTGCTTAGGAAACAATGACATGCCTGTCCTATTGAATGATGATGTTCTTGGCCTTATTGTGTTTAAATCAGACCTTCATGACCCTTCTTCATATCTTGCTTCATGGAATGAAGATGATGTGAGTCCTTGTTCATGGCAATTTGTGCAATGCAATCCTCAGAGTGGAAGAGTTTCAGAGGTCTCATTGGATGGCTTAGGATTATCTGGGAAGATTGGAAGAGGTCTTGAGAAGTTGCAGCATCTAACGGTATTGTCCCTTTCTCATAACAACTTGACTGGGACTATTAGTCCTTCCCTTACTCTTTCTAATAGTCTTGAAAGGTTGAACCTTAGTCACAATGGTCTTTCTGGTCCTTTACCTACTTCTTTTGTCAATATGAGTTCAATAAGATTTCTTGATCTTTCAGAGAATTCATTCTCAGGACCAATCCCTGATAGTTTGTTTGAGAGCTGTTTTTCCCTTCATCACCTTTCTTTAGCTTGGAATAAATTTGAAGGACCAATTCCTAGCACACTTTCTAGATGTTCCTCATTGAATAGTCTAAATCTTTCCAATAACCGTTTCACTGGTAATGTGGACTTTATTGGGATTTGGTCATTGAACAGACTTAGGAATTTGGATCTATCCAATAATGCTTTCTTTGGGAACTTGCCTAATGGAATTTCATCCATACATAACTTGAAAGAGATCTTATTACAAAACAACCAGTTTTCAGGTCCATTACCTTCTGATATTGGACTCTGCCTGCATTTGAATAGGTTGGATTTTAGTAATAATCAGTTCATTGGAGAACTACCAAATTCACTTAGGGGGCTTAATACTTTGAGCTATTTAAGGGCATCAAATAATGTTTTCAACAGTGAATTCCCTCAGTGGATTGGTAACATGACTAGTTTGGAATATCTAGAGCTCTCAAACAATCAGTTCTATGGATTCATCCCACAATCAATAGGGGAACTGAGATCACTGACGTATCTGAGCATTTCAAATAACAAGCTTGTTGGGAACATTCCTTTGTCATTGGCTTACTGCACAAAGTTATCTGTGATCAGGCTCAGAGGGAATGGTCTAAATGGTACCATACCAGAGGGTTTGTTTGGCCTAGGATTGGAGGAAATAGATTTTTCTCATAATGATTTGGTAGGTTCAATTCCAGCAGGATCAAGCAGGCTCTTAGACACTCTCACAAAGTTGGATCTTTCAGATAACCATTTCCAAGGGAATATCCCTGCAGAAATGGGTCTTCTTTCAAAACTAAGATATTTGAATCTGTCTTGGAATGATCTTCATTCACAGATTTCTCCAGAGTTTGGTTTCCTTCAGAATCTAACAGTTTTGGATCTTCGTAATAGTGCCTTGTATGGTTCTGTTCCAGCTGATATATGTGATTCAAGCAATTTGGCAGTCCTTCAACTTGATGGAAATTCATTGAAGGGACCTATTCCAGAAGAGATTGGGAATTGTACATCTCTTTACTTGCTGAGTCTGTCCCACAATAATTTGACTGGTTCAATCCCAAAGTCCATGTCAAAGCTAAACAAGCTGAAAATCCTCAAATTGGAATTCAATGAACTAAGTGGAGAGATACCAATGGAGCTTGGAATGCTTCAAAATCTTCTTGCTGTGAATATATCATATAACAGGCTCACAGGAAGGCTTCCAACTGGTAGCATATTTCAGAACTTGGACAAAAGTTCCTTGGAAGGAAACCTAGGTCTTTGCTCACCCTTGTTGAAGGGTCCATGTAAGATGAATGTCCCCAAGCCTCTAGTGCTTGACCCAAATGCCTATAACAACCAAATAGGTCCACAAAGGCAAAGAAATGAATCATCTATGTCTAGCCCAGATCATCACCACAAGTTCCTTAGTGTTTCTGCTCTTGTAGCAATTTCTGCATCCTTTGTCATCATATTAGGAGTGATTGCTGTTAGCCTACTCAATGTTTCTGTGAGGAGAAGGCTATCATTTGTGGACAATGCTTTGGAAAGCATGTGCTCAAGCTCTTCTAGATCAGGAGCTCCAGCTACAGGAAAGCTTATTCTGTTTGATTCCCAATCCTCACCTGATTGGATCAGCAGTCCAGAATCCTTGCTTAACAAGGCATCTGAGATTGGAGAAGGAGTCTTTGGAACAGTTTACAAGGTTCCATTGGGATCACAAGGTAGAATGGTAGCAATCAAGAAGCTTATCACCTCAAACATACTCCAATATCCTGAAGACTTTGATAGGGAAGTTAGAATCCTAGGCAAAGCAAGGCACCCAAATCTAATAGCACTGAAAGGATACTATTGGACTCCTCAATTACAGCTATTAGTAGCTGAATATGCACCAAATGTGTTGCTTGAACATGGAAATGTGTTGGATTGTGTGGATCCAAGCATGAGTGAGTACCCAGAAGATGAAGTATTGCCAGTTCTGAAGCTTGCAATGGTTTGCACCTCTCAAATACCTTCTAGCAGACCTACTATGGCTGAAGTGGTGCAAATACTTCAAGTCATCAAAACCCCAGTTCCTCAAAGAATGGAAGTGTTTTGA 2601 0.3956 MTSFQPHWSFLTLLISVSYLLNCLGNNDMPVLLNDDVLGLIVFKSDLHDPSSYLASWNEDDVSPCSWQFVQCNPQSGRVSEVSLDGLGLSGKIGRGLEKLQHLTVLSLSHNNLTGTISPSLTLSNSLERLNLSHNGLSGPLPTSFVNMSSIRFLDLSENSFSGPIPDSLFESCFSLHHLSLAWNKFEGPIPSTLSRCSSLNSLNLSNNRFTGNVDFIGIWSLNRLRNLDLSNNAFFGNLPNGISSIHNLKEILLQNNQFSGPLPSDIGLCLHLNRLDFSNNQFIGELPNSLRGLNTLSYLRASNNVFNSEFPQWIGNMTSLEYLELSNNQFYGFIPQSIGELRSLTYLSISNNKLVGNIPLSLAYCTKLSVIRLRGNGLNGTIPEGLFGLGLEEIDFSHNDLVGSIPAGSSRLLDTLTKLDLSDNHFQGNIPAEMGLLSKLRYLNLSWNDLHSQISPEFGFLQNLTVLDLRNSALYGSVPADICDSSNLAVLQLDGNSLKGPIPEEIGNCTSLYLLSLSHNNLTGSIPKSMSKLNKLKILKLEFNELSGEIPMELGMLQNLLAVNISYNRLTGRLPTGSIFQNLDKSSLEGNLGLCSPLLKGPCKMNVPKPLVLDPNAYNNQIGPQRQRNESSMSSPDHHHKFLSVSALVAISASFVIILGVIAVSLLNVSVRRRLSFVDNALESMCSSSSRSGAPATGKLILFDSQSSPDWISSPESLLNKASEIGEGVFGTVYKVPLGSQGRMVAIKKLITSNILQYPEDFDREVRILGKARHPNLIALKGYYWTPQLQLLVAEYAPNVLLEHGNVLDCVDPSMSEYPEDEVLPVLKLAMVCTSQIPSSRPTMAEVVQILQVIKTPVPQRMEVF 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi3g00049 866 ProSiteProfiles Protein kinase domain profile. 720 866 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi3g00049 866 Gene3D Ribonuclease Inhibitor 172 268 IPR032675 -
Sebi3g00049 866 Pfam Leucine Rich Repeat 440 462 IPR001611 GO:0005515
Sebi3g00049 866 ProSiteProfiles Leucine-rich repeat profile. 102 124 IPR001611 GO:0005515
Sebi3g00049 866 ProSitePatterns Protein kinases ATP-binding region signature. 726 750 IPR017441 GO:0005524
Sebi3g00049 866 Gene3D Transferase(Phosphotransferase) domain 1 790 863 - -
Sebi3g00049 866 Pfam Protein kinase domain 722 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi3g00049 866 Gene3D Ribonuclease Inhibitor 340 610 IPR032675 -
Sebi3g00049 866 SUPERFAMILY L domain-like 311 589 - -
Sebi3g00049 866 SMART tyrkin_6 720 852 IPR020635 GO:0004713|GO:0006468
Sebi3g00049 866 Gene3D Ribonuclease Inhibitor 33 171 IPR032675 -
Sebi3g00049 866 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Sebi3g00049 866 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 194 288 - -
Sebi3g00049 866 Pfam Leucine rich repeat 487 547 IPR001611 GO:0005515
Sebi3g00049 866 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Sebi3g00049 866 Pfam Leucine rich repeat 312 355 IPR001611 GO:0005515
Sebi3g00049 866 Gene3D Phosphorylase Kinase; domain 1 718 789 - -
Sebi3g00049 866 SUPERFAMILY L domain-like 50 387 - -
Sebi3g00049 866 SMART LRR_typ_2 366 390 IPR003591 -
Sebi3g00049 866 SMART LRR_typ_2 462 486 IPR003591 -
Sebi3g00049 866 SMART LRR_typ_2 222 246 IPR003591 -
Sebi3g00049 866 SMART LRR_typ_2 148 172 IPR003591 -
Sebi3g00049 866 SMART LRR_typ_2 318 342 IPR003591 -
Sebi3g00049 866 SMART LRR_typ_2 438 461 IPR003591 -
Sebi3g00049 866 SMART LRR_typ_2 558 583 IPR003591 -
Sebi3g00049 866 SMART LRR_typ_2 100 125 IPR003591 -
Sebi3g00049 866 FunFam Inactive leucine-rich repeat receptor-like protein kinase 314 607 - -
Sebi3g00049 866 Gene3D Ribonuclease Inhibitor 271 339 IPR032675 -
Sebi3g00049 866 PANTHER LRR RECEPTOR-LIKE KINASE 459 511 - -
Sebi3g00049 866 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 714 797 - -
Sebi3g00049 866 SUPERFAMILY Protein kinase-like (PK-like) 715 800 IPR011009 -
Sebi3g00049 866 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 33 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi3g00049 Sebi-Chr3 664995 668307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi3g00049 801 863 Receptor kinase-like Gene Family AT3G28040 76.562 1.00e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Sebi3g00049 Pkinase 7.1e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi3g00049 - - gmx:100813764 1338.55