Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi3g00048 ATGGCTACCGCTCCGGCTAGGTCTTTTCTCCAAGTGGCCGCAACGGAGGAGGCTGCACCCCCTCTTAGGGTCGTCCAGATTGAAGGACTGGTTATCCTGAAGATAATTAAGCATTGTAAGGACCACTCACCTTCTTTAGTCACCGGACAACTTCTTGGGTTGGATGTTGGCAGTGTTCTTGAAGTTACTAACTGCTTCCCCTTTCCAATGAGGGAGGAGGATGAGGAAATTGAAGCTGACGGTGCTAATTACCAGCTTGAAATGATGAGGTGCCTGAGGGAGGTTAATGTTGACAATAATACCGTTGGATGGTACCAGTCTACATTGCTTGGTTCCTTTCAGACTGTGGAGCTGATTGAAACCTTTATGAATTACCAGAAACGGGCGCTAGTAAAATGGGGAAAGTTGAGTAAAGTCGGTAGTAAGATGAACAACAATACACTTGTGTATTACCAGATGATGAGAATCTCATGCTACTTCCACTGTCTAGGCAAGTTTTTGAACAGTATCTTAATCAGGTCTGATCAAGGTGTCCTAGCTCTGAAGGCCTTGAAGCTTTCTGACTCATTCATGGAACTCTATCGGAGCAATAATTTTACTGGGGAGAAGTTGAGGGAGAAGAACTTATCATGGGTGGATATCTTTGAGGAAATACCTATCAAAGTTTCAAATTCTGCCCTCATCAGTGCTTTTATGACAGAGCTTGAACCTGACAGCCCAGTCACCCAGTGTGATTATGATCGTCTGCAATTGTCGACCAGTTCATTAATGGAGAGAAATATGGAATTTTTGATTGAATGCATGGATGACTTGTCAATGGAACAACAAAAGTTCCAATTCTACTATCGTAGCTTGTCTCGTCAGCAAGCTCAGCAGCAAGCATGGCTTCAGAAGAGAAGGGCGGAGAACATGTCACGTAAAGCTGCTGGAGAGGAGCCTTTGCCTGAGGAAGATCCTTCAAACCCCATTTTTAAGCCACTCCCTGAGCCATCACGGTTGGAGAGCTTCCTCATAACAAATCAAATTTCCAACTACTGCAACCAAATCAATGGGGCAGAGCTTTAA 1065 0.4441 MATAPARSFLQVAATEEAAPPLRVVQIEGLVILKIIKHCKDHSPSLVTGQLLGLDVGSVLEVTNCFPFPMREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTLLGSFQTVELIETFMNYQKRALVKWGKLSKVGSKMNNNTLVYYQMMRISCYFHCLGKFLNSILIRSDQGVLALKALKLSDSFMELYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDSPVTQCDYDRLQLSTSSLMERNMEFLIECMDDLSMEQQKFQFYYRSLSRQQAQQQAWLQKRRAENMSRKAAGEEPLPEEDPSNPIFKPLPEPSRLESFLITNQISNYCNQINGAEL 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi3g00048 354 SMART pad1_6 24 156 IPR000555 GO:0005515|GO:0008233|GO:0008237
Sebi3g00048 354 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 23 126 IPR000555 GO:0005515|GO:0008233|GO:0008237
Sebi3g00048 354 CDD MPN_eIF3h 23 318 IPR027524 GO:0003743|GO:0005737|GO:0005852
Sebi3g00048 354 Pfam C-terminal region of eIF3h 176 350 IPR045810 -
Sebi3g00048 354 MobiDBLite consensus disorder prediction 299 326 - -
Sebi3g00048 354 MobiDBLite consensus disorder prediction 300 314 - -
Sebi3g00048 354 Gene3D Cytidine Deaminase, domain 2 2 245 - -
Sebi3g00048 354 Hamap Eukaryotic translation initiation factor 3 subunit H [EIF3H]. 20 353 IPR027524 GO:0003743|GO:0005737|GO:0005852
Sebi3g00048 354 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 17 351 - -
Sebi3g00048 354 ProSiteProfiles MPN domain profile. 25 160 IPR037518 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi3g00048 Sebi-Chr3 657101 660710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi3g00048 88 352 Eukaryotic Initiation Factors Gene Family AT1G10840 71.321 2.59e-128 366