Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi3g00036 ATGGCATTCCCAGAAGGTGGTGCCGAAGAAGACACCAACATCGATGTTCACACCACACGTGGCACCCCCATTCGGTATCTTCCCCTCGATCACCTCTACTCCGCCACGTCACCTTGCAGTGGCTCCGCTAATGTCATGTCCAAGAAGGTGAAAGCTCGCAAGTTCAGCCTCAACAACAACAACGGTGACAGTGACCCGCCGCTCGATCATCATCACGGCAGTAAGAAAACGACGTCGTCTTTGCCGGTGCTTCCCCCTCCTAAGCCCCCTCTTCTACATGTCTACTCTCGCCGACGCAAGAGGCGTTCCTCCCCGACGTCGTCGTTTTACCATTCGGGCCGAGTCAGGGAGAATGGGGACTCCGAGAAGAGGGTTCTGAAGAAGAGGAAAACTGGGAGCACCGAGTTGGAGAAATTGGGCGTGGATTTGAACGCGGTGGGGAACCTAGATGGGCCTCGATTGAGGGAATGTCGCACTCAAATTGGGAATTCTGGCATTGCTGGCAACAACAACGCCAAGTTTGGTGGTGGTTCCCTGGAGAATTTCCCCAAGTTGCTGCCGGAATCTCGCACTGTGAAGAGATGGGTCATGTTGAATTTTGAGAATGCTGATCCCGAGGCATTCATTGGATTACGATGCAAGGTTCATTGGCCCATGGATTTAAGATCGTACACCGGTTACGTCAACGGTTATGATGTGGAAACTAAGATACATCATATCAAGTATGATGATGGTGATGAGGAAAATTTAATTCTTTCAAATGAAAATATAAAGTTTCATGTTTCCCGTGATGAGATGAAACATTTAAAATTGAGTTACGCCAAAGTTCGTGACAGTAACGTCTCTGATTATGACATTGAAGAGATGCTTGCATTGGCTGCAAGTTTGGATGATTGCCAAGACTTTGAGGCAGGGGATATCATATGGGCTAAGCTAACAGGCCATGCAATGTGGCCAGCTGTTGTTCTCGATGAATCATTTGCTAGCAGCTGTTTAGAAGAGGCAAAAAGGTATTTAAGTGAACAGAAGCTTCCTTTGGAGATGCTAGAATTGCAGAAGAGATGTACAGCCGATGACAGTAACAATGTAAGTGGAGAGGATGGAGGATGTACAGATTCAGGTGAAGATTGTTTAAATGACAACGGAGTTTGGGTGGCACCTGAAAACATTGAAACTTTTCCTTATGAAGTAGGAGACTTGCAAATTCTAAGCCTTGGAAAAATAGTTGAAGATTCTGCATCTTTTGGGGATGGAAGATCCATCTGGCCTGAAGGGTACACAGCAGTGAGGAAGTTTACTTCTGTTACTGACCCTAAAGTATCTGTGCCTTATAAGATGGAGGTTTTGAGAGATCCAGAATCCAAAGTCCGGCCTCTATTTAGATTGACAGTTGATGGTGGTGAGCAGTTCAATGGCTATACACCATCTATTTGCTGGAATCAAGTATACAAAAGGATAAAGAAAATGGAAAAGGATGTTTCTGAAGGTTCTGTTGCTGAAGGTGGGGTAGAAAGGGGCTACGAATCTGGTTCTGATATGTTTGGTTTCTCCAATCCTAAAGTGGCTAAATTGATACGGGGATTATCTAAACGCCAAGTCTCTTTGAAGAACTCAATTTCCAAGTTAGGTTCTAGAAGACATAATGACTTGCCTCTTGGTTATAGGCAGGTTCATATTAATTGGTTTGATCTTGATAAGTGCAATGTGTGCCATATGGATGAGGAGTACGAGAACAATCTGTTTCTGCAGTGTGACAAATGCAGAATGATGGTCCATGCTAGATGCTATGGAGAACTGGAACCTGTTAATGGAGTTCTATGGTTGTGCAACTTATGTCGTTCGGGTGCTCCTCCCCCACCTTGTTGCTTATGTCCACTCATAGGCGGAGCAATGAAGCCTACGACAGATGGCAGATGGGCACATTTGGCTTGTGCCATGTGGATACCTGAAACTTGCTTAGCTGATGTCAAGAGAATGGAGCCTATTGATGGTTTGAATAGAATTAGTAAGGACCGCTGGAAGTTGTTATGCAGCATATGCGGTGTATCTTATGGTGCCTGCATCCAATGTTCAAACAATTCTTGTCGAGTGGCATACCATCCACTTTGTGCACGTGCTGCTGGTCTCTGTGTTGAGCTTGAGAACGAGGACAGGCTTTATCTACTTTCTGTTGATGATGATGAAGATCAGTGCATTCGCTTACTTTCTTTCTGCAAGAAACATAGGCAGCCATCTCATGAACATTCTGTTGCTGATGAACGTATTGTGCGAGTTGCTGGTCAGTGTTCAGATTATGAACCACCACCCAATCCATCTGGTTGTGCTCGAAGTGAGCCATATGATTACTTTGGTAGGAGAGGCCGAAAAGAACCTGAAGCACTTGCAGCTGCATCGTTGAAACGTTTGTTTGTAGAGAATCAATCTTACTTAGTAGGTGGATACTGCCAACATGGATTGTTAAACAACCCAGAGCCTTCTGGCAGAGGAGTGTGCTCTAAATTCTTTTGTAGCCAGCAAAGGCTGAGGACCTCTCTGATAGACTCTTCAGACAGCATACTTTCTATTGCCGAAAAATACAAGTACATGAGGGAAACCTTTCGGAAACGACTAGCATTTGGGAAATCAAGAATTCATGGATTTGGCATCTTTGCAAAGCATCCATATAAAGGCGGAGACATGGTGATTGAATACACTGGTGAACTTGTTAGGCCTCCCATAGCTGACCGGAGAGAGCACTTTATATACAATTCTTTGGTGGGTGCTGGAACATATATGTTTAGGATTGATGATGAACGAGTCATTGATGCTACTAGAGCAGGAAGCATTGCTCATTTAATTAATCATTCTTGTGCTCCAAATTGCTATTCAAGAGTTATAAGTGTTAATGGTGATGAGCATATTATAATATTTGCGAAGAGGGACATCAAACAATGGGAGGAACTTACATATGACTATAGATTTTTCTCAATTGATGAACGGCTGGCTTGTTACTGTGGCTTCCCAAAATGCCGAGGCATAGTAAATGATACTGAGGCAGAAGAGCGAGCTGCTACCCTATATGCACCAAGAAGTGAATTAATAGATTGGAGAGGAGAATGA 3099 0.4421 MAFPEGGAEEDTNIDVHTTRGTPIRYLPLDHLYSATSPCSGSANVMSKKVKARKFSLNNNNGDSDPPLDHHHGSKKTTSSLPVLPPPKPPLLHVYSRRRKRRSSPTSSFYHSGRVRENGDSEKRVLKKRKTGSTELEKLGVDLNAVGNLDGPRLRECRTQIGNSGIAGNNNAKFGGGSLENFPKLLPESRTVKRWVMLNFENADPEAFIGLRCKVHWPMDLRSYTGYVNGYDVETKIHHIKYDDGDEENLILSNENIKFHVSRDEMKHLKLSYAKVRDSNVSDYDIEEMLALAASLDDCQDFEAGDIIWAKLTGHAMWPAVVLDESFASSCLEEAKRYLSEQKLPLEMLELQKRCTADDSNNVSGEDGGCTDSGEDCLNDNGVWVAPENIETFPYEVGDLQILSLGKIVEDSASFGDGRSIWPEGYTAVRKFTSVTDPKVSVPYKMEVLRDPESKVRPLFRLTVDGGEQFNGYTPSICWNQVYKRIKKMEKDVSEGSVAEGGVERGYESGSDMFGFSNPKVAKLIRGLSKRQVSLKNSISKLGSRRHNDLPLGYRQVHINWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRSGAPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGLNRISKDRWKLLCSICGVSYGACIQCSNNSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRQPSHEHSVADERIVRVAGQCSDYEPPPNPSGCARSEPYDYFGRRGRKEPEALAAASLKRLFVENQSYLVGGYCQHGLLNNPEPSGRGVCSKFFCSQQRLRTSLIDSSDSILSIAEKYKYMRETFRKRLAFGKSRIHGFGIFAKHPYKGGDMVIEYTGELVRPPIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCAPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDERLACYCGFPKCRGIVNDTEAEERAATLYAPRSELIDWRGE 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi3g00036 1032 Gene3D - 208 259 - -
Sebi3g00036 1032 CDD PHD_ATX1_2_like 566 612 IPR042010 -
Sebi3g00036 1032 SUPERFAMILY Tudor/PWWP/MBT 298 331 - -
Sebi3g00036 1032 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 744 IPR013083 -
Sebi3g00036 1032 Pfam PHD-finger 579 613 - -
Sebi3g00036 1032 ProSiteProfiles SET domain profile. 868 986 IPR001214 GO:0005515
Sebi3g00036 1032 FunFam Histone-lysine N-methyltransferase 801 1025 - -
Sebi3g00036 1032 SMART PHD_3 676 742 IPR001965 -
Sebi3g00036 1032 SMART PHD_3 566 613 IPR001965 -
Sebi3g00036 1032 SMART set_7 868 992 IPR001214 GO:0005515
Sebi3g00036 1032 Gene3D - 393 533 - -
Sebi3g00036 1032 ProSiteProfiles Post-SET domain profile. 992 1008 IPR003616 -
Sebi3g00036 1032 CDD SET_SETD1-like 856 1004 - -
Sebi3g00036 1032 Pfam PHD-zinc-finger like domain 620 741 - -
Sebi3g00036 1032 MobiDBLite consensus disorder prediction 115 129 - -
Sebi3g00036 1032 Pfam F/Y rich C-terminus 457 529 IPR003889 GO:0005634
Sebi3g00036 1032 SUPERFAMILY SET domain 865 1005 IPR046341 -
Sebi3g00036 1032 SUPERFAMILY FYVE/PHD zinc finger 558 628 IPR011011 -
Sebi3g00036 1032 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 558 612 IPR013083 -
Sebi3g00036 1032 MobiDBLite consensus disorder prediction 56 129 - -
Sebi3g00036 1032 ProSiteProfiles Zinc finger PHD-type profile. 564 615 IPR019787 -
Sebi3g00036 1032 FunFam Histone-lysine N-methyltransferase 616 744 - -
Sebi3g00036 1032 CDD ePHD_ATX1_2_like 627 741 IPR041956 -
Sebi3g00036 1032 Pfam SET domain 879 985 IPR001214 GO:0005515
Sebi3g00036 1032 Pfam F/Y-rich N-terminus 398 448 IPR003888 GO:0005634
Sebi3g00036 1032 Gene3D - 285 344 - -
Sebi3g00036 1032 SMART fyrc_3 459 543 IPR003889 GO:0005634
Sebi3g00036 1032 SMART fyrn_3 407 451 IPR003888 GO:0005634
Sebi3g00036 1032 Gene3D SET domain 826 1020 IPR046341 -
Sebi3g00036 1032 ProSiteProfiles FYR domain FYRC motif profile. 455 541 IPR003889 GO:0005634
Sebi3g00036 1032 CDD Tudor_Agenet_AtEML-like 209 259 - -
Sebi3g00036 1032 ProSiteProfiles Extended PHD (ePHD) domain profile. 618 742 IPR034732 -
Sebi3g00036 1032 PANTHER PHD FINGER PROTEINS 49 1016 - -
Sebi3g00036 1032 ProSiteProfiles PWWP domain profile. 304 323 IPR000313 -
Sebi3g00036 1032 ProSiteProfiles FYR domain FYRN motif profile. 392 451 IPR003888 GO:0005634
Sebi3g00036 1032 ProSitePatterns Zinc finger PHD-type signature. 567 612 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi3g00036 Sebi-Chr3 532210 543400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi3g00036 536 712 C2H2 Transcription Factor Family AT3G14740 38.462 5.05e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi3g00036 zf-HC5HC2H_2 4.2e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi3g00036 - - gmx:100806736 1768.05