Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi3g00033 ATGTCTTCTCTCCTTTGGAGTTCCATTGCAATGTGTGTAGCTGTCCTACTTCTACTCCTTCAACTATGTTACCTTGGAGTTGCACACCCTGATAGGATCACTCGCTTACCTGGTCAACCCCATGTTCAGTTTCATCAGTTTTCAGGTTATGTCACCGTTGATAACAAAAACAACAGAGCACTGTTTTTCTACTTTGCTGAAGCTGAAAAAGATGCACTTTCCAAGCCCCTTGTTCTTTGGCTCAATGGGGGGCCTGGTTGTTCTTCTCTTGGGGTTGGTGCATTTTCAGAGAATGGACCATTTAGGCCTAAAGGAGAGGCCTTGGTTAGGAACCAATTCAGCTGGAACAGAGAGGCAAATATGTTGTACTTGGAAACGCCAATTGGAGTGGGGTTCTCTTACTCAACTGACACTTCCTCTTATGAGGTTATGCCATGTCCACTTCCTGCCAGGGATAATCTGGTGTTCTTGCAAAACTGGTTTGTAAGGTTCCCAGAATACAGAAACAGAAGTTTATTCATTGTAGGAGAAAGCTATGCTGGTCATTATGTTCCTCAACTGGCTGAGCTTATGCTCCAATTCAACAAAAAGGAGAAGTTGTTCAATCTAAAAGGCATTGCTCTTGGCAACCCAGTTCTAGAATTTGCAACAGATTTCAATTCTAGAGCTGAGTTCTTCTGGTCTCATGGATTAATCTCAGACTTAACGTACAAAATGTTCACTTCTGTTTGTAACTATTCAAGATATGTGAGGGAATACTATAGTGGCTCTGTTTCTCCTATCTGTTCAAGTGTTATGAGCCAAGTTAGTACAGAAACTAGTAGATTTGTTGACAAGTATGATGTGACCCTTGATGTTTGTATATCTTCAGTGTTTGCACAAACCAAAGTCCTCAATCCCCAGCAAGTAACTGAAACAATAGATGTATGTGTGGAAGATGAAACAGTCAATTATCTGAATAGGAAAGATGTTCAATCAGCTTTACATGCACGTTTGGTTGAGGTACAAAGATGGTCTGCTTGCAGCAATGTCCTTGATTATGAGCTACGTGACTTGGAGATACCAACAATCACGGTTGTAGGCAAGCTAGTCAAGGCAGGAATACCAGTATTGGTCTACAGTGGTGATCAGGATTCAGTTATTCCATTGACTGGAAGCAGAACATTAGTACATCAATTGGCAAAAGAACTTAGATTGAAGACTAGTGTGCCATATAGGGTCTGGTTTGAGGGGCAGCAGGTTGGTGGTTGGACTCAAGTTTATGGTGACATCCTTTCATTTGCCACCATTAGGGGAGCATCACATGAAGCTCCATTTTCACAACCTGAGAGATCACTTGTGCTGTTCAAGTCCTTCTTAGAAGGCCAAGCTCTACCAGAAGAATTTTGA 1389 0.419 MSSLLWSSIAMCVAVLLLLLQLCYLGVAHPDRITRLPGQPHVQFHQFSGYVTVDNKNNRALFFYFAEAEKDALSKPLVLWLNGGPGCSSLGVGAFSENGPFRPKGEALVRNQFSWNREANMLYLETPIGVGFSYSTDTSSYEVMPCPLPARDNLVFLQNWFVRFPEYRNRSLFIVGESYAGHYVPQLAELMLQFNKKEKLFNLKGIALGNPVLEFATDFNSRAEFFWSHGLISDLTYKMFTSVCNYSRYVREYYSGSVSPICSSVMSQVSTETSRFVDKYDVTLDVCISSVFAQTKVLNPQQVTETIDVCVEDETVNYLNRKDVQSALHARLVEVQRWSACSNVLDYELRDLEIPTITVVGKLVKAGIPVLVYSGDQDSVIPLTGSRTLVHQLAKELRLKTSVPYRVWFEGQQVGGWTQVYGDILSFATIRGASHEAPFSQPERSLVLFKSFLEGQALPEEF 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi3g00033 462 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 32 442 IPR001563 GO:0004185|GO:0006508
Sebi3g00033 462 Gene3D alpha/beta hydrolase 28 289 IPR029058 -
Sebi3g00033 462 FunFam Carboxypeptidase 26 459 - -
Sebi3g00033 462 Gene3D - 357 455 - -
Sebi3g00033 462 ProSitePatterns Serine carboxypeptidases, serine active site. 174 181 IPR018202 GO:0004185
Sebi3g00033 462 FunFam Carboxypeptidase 356 455 - -
Sebi3g00033 462 ProSitePatterns Serine carboxypeptidases, histidine active site. 425 442 IPR033124 GO:0004185
Sebi3g00033 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 425 438 IPR001563 GO:0004185|GO:0006508
Sebi3g00033 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 111 123 IPR001563 GO:0004185|GO:0006508
Sebi3g00033 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 160 185 IPR001563 GO:0004185|GO:0006508
Sebi3g00033 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 134 IPR001563 GO:0004185|GO:0006508
Sebi3g00033 462 Gene3D - 310 346 - -
Sebi3g00033 462 Pfam Serine carboxypeptidase 38 455 IPR001563 GO:0004185|GO:0006508
Sebi3g00033 462 SUPERFAMILY alpha/beta-Hydrolases 33 458 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi3g00033 Sebi-Chr3 423017 426213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi3g00033 318 458 Calmodulin-binding Proteins AT2G22960 26.950 1.04e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi3g00033 K16297 - gmx:100805130 822.772