Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi3g00031 ATGGATGCACAGTGTTCTGCCTATGATAATGATTCATTCAAACTCGTGAAAAGTTTGTCCCTGAGAAAAGGCACAAAAAGTGATGTAGCTGCTGCCCTAGAAGAGGAGCTTCATAGTGCAAGATCTACATTTGAGCAAGCTCGGTTTAATCTGGTTACTGCCTTATCAAATGTTGAAGCAAAGAAGAGATTTGAATTTTTGGAAGCAGTCAGTGGGACCATGGATGCACATCTTCGTTACTTCAAACAGGGGTATGAATTATTGCACCAAATGGAGCCATATATTAACCAGGTCTTGACTTATGCTCAGCAATCAAGAGAAAGGTCGAATTATGAGCAAGCAGCTCTCAATGAAAGAATGCAAGAGTACAAACGGCAGATTGATCGAGAGAGTAGGTGGGCTTCAAATGGTTCAAATGGGTCTCCTAATGGAGATGGTATACAAGCCATTGGTAGAAGTTCACATAAGATGATAGAGGCAGTTATGCAATCTGCTGCAAAGGGAAAGGTTCAAACTATTCGACAAGGTTATCTCTCAAAGCGTTCGTCAAATTTAAGGGGGGACTGGAAAAGGAGGTTTTTCGTTCTTGATAGCCGAGGAATGTTGTATTACTACCGTAAACAGTGTAGCAAATCATCTGGGTCTAGTAGCCAACATTCTGGTCAGCGGAATAGTTCTGAGCTTGGTTCTGGACTTTTAAGTCGATGGCTGTCTTCTCATCATCATGGTGGGGTACATGATGAGAAATCTGTTGCTCATCACACTGCAGAGAGTGCGCTGGACCAAATGGATTGGATTGAAAAAATCACAGGTGTTATTGCCTCATTGCTGAGTTCTCAGATTCCCGAAAGGTTGTTACCTGCCAGTCCAATGGGAAGTGGTGATAATAGATGTGCTGATTGTGGTGCCCCTGAACCTGATTGGGCATCTCTAAATCTTGGTGTTCTTGTTTGCATCGAGTGTTCTGGTGTTCATCGAAACCTTGGTGTGCACATATCAAAGGTGAGGTCTCTGACATTGGATGTTAAAGTGTGGGAGCCTTCTGTGATAAGTTTATTTCAGTCTCTTGGGAATACCTTTGCCAACTCAGTATGGGAGGAACTATTACAATCAAGAAGTGCCTTTCAGGTTGATCTTGTCTCCACAGGCTTAAGCAAGTCCGATAAACAACTGATGCTTTTCATCACCAAACCTTGTCAATCTGATTCTCTCTCTGTCAAGGAAAGTTCATCCATGCAAAGAGAAGCTTTTTGTTCGCAAACCAAAGGACAGTCAATACCGTCTCCTGGTGGCACACAGATTTGGGAGGCTGTTCGTGCTAATGACAAAAAAGCTGTCTACCGCTACATTGTTAATTCTGACATTGATGTTAATCTTGGAACACATTGGACTGGTCCTCTAATAGGCTCTTTGAATTCGGTGGGTACAAAAGACGGCCAGGCTATGGATTATCTAGATGGGTGCACACTACTTCACCTCGCTTGTGAAACTGCGGATATTGGCATGCTGGAGCTCCTCCTACAATATGGTGCAAATATTAATGCAACTGATTTGAGAGGTCAAACACCACTACATCGCTGTATTCTCAAAGGCAAATCTACATTTGCGAGATTACTGCTTTCAAGGGGAGCTGATCCTCAAGCTGTGGATGAGCAAGGAAGAACCCCTATTGAGCTTGCTGCAGAATCAAATGCTGATGACAGAGAAGTCCATGCTTCATTGACTGATTCTAATGGATGA 1740 0.4305 MDAQCSAYDNDSFKLVKSLSLRKGTKSDVAAALEEELHSARSTFEQARFNLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSSSQHSGQRNSSELGSGLLSRWLSSHHHGGVHDEKSVAHHTAESALDQMDWIEKITGVIASLLSSQIPERLLPASPMGSGDNRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEELLQSRSAFQVDLVSTGLSKSDKQLMLFITKPCQSDSLSVKESSSMQREAFCSQTKGQSIPSPGGTQIWEAVRANDKKAVYRYIVNSDIDVNLGTHWTGPLIGSLNSVGTKDGQAMDYLDGCTLLHLACETADIGMLELLLQYGANINATDLRGQTPLHRCILKGKSTFARLLLSRGADPQAVDEQGRTPIELAAESNADDREVHASLTDSNG 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi3g00031 579 Gene3D - 167 282 IPR011993 -
Sebi3g00031 579 MobiDBLite consensus disorder prediction 127 149 - -
Sebi3g00031 579 ProSiteProfiles ARF GTPase-activating proteins domain profile. 279 366 IPR001164 GO:0005096
Sebi3g00031 579 SUPERFAMILY ArfGap/RecO-like zinc finger 293 376 IPR037278 -
Sebi3g00031 579 SUPERFAMILY BAR/IMD domain-like 14 194 IPR027267 -
Sebi3g00031 579 Gene3D - 525 574 IPR036770 -
Sebi3g00031 579 ProSiteProfiles Ankyrin repeat profile. 486 518 IPR002110 GO:0005515
Sebi3g00031 579 SMART PH_update 172 276 IPR001849 -
Sebi3g00031 579 ProSiteProfiles Ankyrin repeat region circular profile. 486 517 - -
Sebi3g00031 579 ProSiteProfiles PH domain profile. 171 274 IPR001849 -
Sebi3g00031 579 MobiDBLite consensus disorder prediction 132 148 - -
Sebi3g00031 579 Coils Coil 106 126 - -
Sebi3g00031 579 SMART arf_gap_3 280 402 IPR001164 GO:0005096
Sebi3g00031 579 Gene3D Arf GTPase activating protein 284 411 IPR038508 -
Sebi3g00031 579 ProSiteProfiles Ankyrin repeat region circular profile. 519 551 - -
Sebi3g00031 579 PANTHER CENTAURIN/ARF 15 576 IPR045258 GO:0005096
Sebi3g00031 579 PRINTS HIV Rev interacting protein signature 314 331 IPR001164 GO:0005096
Sebi3g00031 579 PRINTS HIV Rev interacting protein signature 337 358 IPR001164 GO:0005096
Sebi3g00031 579 PRINTS HIV Rev interacting protein signature 295 314 IPR001164 GO:0005096
Sebi3g00031 579 Gene3D - 412 524 IPR036770 -
Sebi3g00031 579 ProSiteProfiles Ankyrin repeat profile. 519 551 IPR002110 GO:0005515
Sebi3g00031 579 CDD ArfGap 294 369 - -
Sebi3g00031 579 Pfam BAR domain of APPL family 15 112 IPR004148 GO:0005515|GO:0005737
Sebi3g00031 579 Pfam Putative GTPase activating protein for Arf 294 372 IPR001164 GO:0005096
Sebi3g00031 579 SUPERFAMILY PH domain-like 172 274 - -
Sebi3g00031 579 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 288 417 - -
Sebi3g00031 579 Pfam Ankyrin repeats (many copies) 506 560 IPR002110 GO:0005515
Sebi3g00031 579 SMART ANK_2a 519 548 IPR002110 GO:0005515
Sebi3g00031 579 SMART ANK_2a 486 515 IPR002110 GO:0005515
Sebi3g00031 579 MobiDBLite consensus disorder prediction 559 579 - -
Sebi3g00031 579 SUPERFAMILY Ankyrin repeat 429 565 IPR036770 -
Sebi3g00031 579 Gene3D Arfaptin homology (AH) domain/BAR domain 8 130 IPR027267 -
Sebi3g00031 579 Coils Coil 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi3g00031 Sebi-Chr3 404600 410900 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi3g00031 295 395 C2H2 Transcription Factor Family AT4G21160 48.544 2.21e-20 90.9