Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi3g00022 ATGAACATAAGATCATTTTCACACATACTAAAAGTGGATCCAAGAAGGCATGGAAAGCTGCCCCTATCTTCACAAGCACCAGAGGCTAAAGAAGAGAAAGAAGACACAGTAGATGATAAGTTTGATGCTTATGCATCTTCTTGGTGTGCTCCAGACAGTGACATGTCTGCCATGGTTTCAGCTCTAACTCAAGTTATGGGAACAACCAATCGGAACCCACATATGGCACAATCAACCTCTTTTCCTGAAGATCCTCACCCACACCCATCTCAACCTCTTCTAGATCAAGAGGTGAGAAAGAAAACACACTACAGAGGAGTGAGACAGAGACCATGGGGAAAATGGGCAGCAGAGATTCGTGATCCAAAGAAAGCAGCGAGAGTGTGGCTTGGAACCTTTGACACAGCTGAGGATGCAGCCATTGCATATGACAAAGCAGCACTCAAATTCAAAGGCACTAAAGCTAAGCTTAATTTCCCTCAAAGAGTTCAACTTCAAGCTCAAGGGAACACTACTAATCTTGTTGGTTATGACTCTGCTGCTGCAAACAGAACCGTTTTTCCTTCCCATGCCACTAGTGCTAGTAATGATAGTGCCATTCAACAAAGTTCTGTTGCCCTTCCACCTCCATCATTCTCCACACAACAACAACAACAAGCTTTCCCAGATCTGTTTCAATATGCACAGATTCTTTCAAGTGATGATGCACAATTCCCTTATTACACATCCAATCTTTTCAATCAACAACAACCTTTCACTTCACAATCTTCTTCTTCTTCCTCACCCAATAACTTCTACAACCACCAACAACATGATGAAGAAGAAGGACATCATCGATACCCAGACCAGTAA 852 0.4272 MNIRSFSHILKVDPRRHGKLPLSSQAPEAKEEKEDTVDDKFDAYASSWCAPDSDMSAMVSALTQVMGTTNRNPHMAQSTSFPEDPHPHPSQPLLDQEVRKKTHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAAIAYDKAALKFKGTKAKLNFPQRVQLQAQGNTTNLVGYDSAAANRTVFPSHATSASNDSAIQQSSVALPPPSFSTQQQQQAFPDLFQYAQILSSDDAQFPYYTSNLFNQQQPFTSQSSSSSSPNNFYNHQQHDEEEGHHRYPDQ 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi3g00022 283 MobiDBLite consensus disorder prediction 249 267 - -
Sebi3g00022 283 MobiDBLite consensus disorder prediction 1 37 - -
Sebi3g00022 283 SMART rav1_2 103 166 IPR001471 GO:0003700|GO:0006355
Sebi3g00022 283 MobiDBLite consensus disorder prediction 268 283 - -
Sebi3g00022 283 MobiDBLite consensus disorder prediction 191 215 - -
Sebi3g00022 283 FunFam Ethylene-responsive transcription factor 2 102 161 - -
Sebi3g00022 283 Pfam AP2 domain 102 152 IPR001471 GO:0003700|GO:0006355
Sebi3g00022 283 CDD AP2 102 160 IPR001471 GO:0003700|GO:0006355
Sebi3g00022 283 MobiDBLite consensus disorder prediction 70 91 - -
Sebi3g00022 283 PANTHER DNA-BINDING DOMAIN 60 247 IPR044808 GO:0003700|GO:0009873
Sebi3g00022 283 SUPERFAMILY DNA-binding domain 103 161 IPR016177 GO:0003677
Sebi3g00022 283 MobiDBLite consensus disorder prediction 249 283 - -
Sebi3g00022 283 PRINTS Ethylene responsive element binding protein signature 126 142 IPR001471 GO:0003700|GO:0006355
Sebi3g00022 283 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
Sebi3g00022 283 Gene3D AP2/ERF domain 102 163 IPR036955 GO:0003700|GO:0006355
Sebi3g00022 283 ProSiteProfiles AP2/ERF domain profile. 103 160 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi3g00022 Sebi-Chr3 343968 348898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi3g00022 54 165 AP2-EREBP Transcription Factor Family AT5G61890 62.500 4.26e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi3g00022 AP2 1.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi3g00022 - - gmx:100796624 285.804