Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi39g00012 ATGGAAGAGCCTATTGTAGTGAACAAAGGTGAAGAGCCTCTGGATTTGCCTCCAGAAAAAGCTAAGATGGGTGAGAAAGAGTGGTACTTCTTCTGTCAAAAGGATAGGAAGTATCCAACAGGGATGAGGACTAATAGAGCTACAGAATCTGGATATTGGAAGGCAACAGGAAAAGATAAGGAGATTTACAAAGGAAAAGGGAACCTTGTTGGGATGAAGAAGACTCTTGTGTTCTATAGAGGAAGAGCTCCAAAGGGAGAGAAGACTAATTGGGTCATGCATGAATTCAGATTGGAAGGCAAATTTGCAACTTACAGCCTTCCTAAGGCAGCTAAGATGTTAAAAAGACTCAAATTTCCTGGCCTTTTGAGGATGAACTCAATTGGGGATGATCTTATGGATTATGCTTCACTTCCACCTCTCATGGATCCTTCTTATGGCATCAACCCCAACACCAAAGCTACAAGCTTTAGTGATGATGGCTTCAAAGGAACCAACCCATTATCATCAACTAAATCACAATCAGATGGCTATTATCTCCCCACTTTTTCCATCAACAATCATCACCAGCTTTTGATCAAACCAGAAGACCACAGAACCACCTATGAGATTCCCACCACAAACTACACTTCCAACCAAGCCAATTTCACCAACCCAATGATGAACAACATGAACACAAACACACTCTCACAACAGCCTCAGAGTCACTCCCCTTTTCAGAAAAACATCTTCTCTGACTACTATCTGCACCAAAACAGAATCAAAAGTTCCATGCCAAGTGTTACAGGTTTTGGAAACATTAACAACACACATGATGATGCTATCCTAAGAGCATTTGCAGCCAAGAATAATAGCAACAATGAGTACATTTCTGGATTGGACAAACAGTGCAAGATGGAGCAATTTTCTTCTAACCATTCCCAAGACACTGGACTAAGCAATGACAGAAACACTGATACATCTTCAGTGGTTTCAAAGCAACAAGACATTGGAAGATCAAGTAGAACATTGTATGAAGATCTTGAAGGTCCATCATCAGTTGCACCTCTCTCAGATTTGGAATGCTTATGGGACCTCTGA 1080 0.4102 MEEPIVVNKGEEPLDLPPEKAKMGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIYKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFATYSLPKAAKMLKRLKFPGLLRMNSIGDDLMDYASLPPLMDPSYGINPNTKATSFSDDGFKGTNPLSSTKSQSDGYYLPTFSINNHHQLLIKPEDHRTTYEIPTTNYTSNQANFTNPMMNNMNTNTLSQQPQSHSPFQKNIFSDYYLHQNRIKSSMPSVTGFGNINNTHDDAILRAFAAKNNSNNEYISGLDKQCKMEQFSSNHSQDTGLSNDRNTDTSSVVSKQQDIGRSSRTLYEDLEGPSSVAPLSDLECLWDL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi39g00012 359 SUPERFAMILY NAC domain 12 110 IPR036093 GO:0003677|GO:0006355
Sebi39g00012 359 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 252 - -
Sebi39g00012 359 Gene3D NAC domain 5 117 IPR036093 GO:0003677|GO:0006355
Sebi39g00012 359 MobiDBLite consensus disorder prediction 301 334 - -
Sebi39g00012 359 ProSiteProfiles NAC domain profile. 1 120 IPR003441 GO:0003677|GO:0006355
Sebi39g00012 359 Pfam No apical meristem (NAM) protein 11 98 IPR003441 GO:0003677|GO:0006355
Sebi39g00012 359 MobiDBLite consensus disorder prediction 301 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi39g00012 Sebi-Chr39 732672 734324 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi39g00012 12 146 NAC Transcription Factor Family AT5G18270 65.385 6.88e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi39g00012 NAM 1.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi39g00012 - - aprc:113861501 516.153