Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi39g00003 ATGGACTTCCTTACTCTCATCACTTTTCTACTGATCTTGTTAATGCCTACAATCTCGTCTTCCCAGTATTTAGGGAATAAACTTCTCTTTCATCGTAAGATATTACCCAACAAACAGGAAGACATTACCTCTTATGCTGTCATCTTTGATGCTGGTAGCACTGGCAGTCGTGTACATGTCTTCCATTTTGATCAGAACTTAGATCTCCTTCACATTGGCGAAGATGTTGAGTTTTATGATAAGATCAAGCCCGGTTTGAGTGCATATGCGGATAATCCGGAAGAAGCCGCAGAATCTCTAATCCCACTTTTAGAGAAAGCAGAAAGTGTGGTCCCTGTGGACATGCACCCCAAGACACCCCTTCGGCTCGGGGCAACTGCAGGTTTAAGGCTTTTGGATGGGAATGCTTCTGAGCTGATATTGCAAGCGGTTAGGGATATGTTCAGCAACAGAAGTACCCTGAATGTCCAACCTGATGCAGTAGCTATTATTGATGGAACCCAAGAAGGTTCTTATCTGTGGGTGACAATTAACTATCTATTGGGGACATTGGGGAAAAGGTTTCAAAAGACAGTGGGAGTAGTTGATCTTGGAGGTGGATCTGTTCAAATGACATATGCCGTCTCAAGAAACACAGCTAAAATGCTCCAAAAGTACCAGATGGAGAGGATCCATACACAAAGAGGATTGTGCTCAAGGGAAAGAAATATGACCTCTATGTTCACAGGAGTAACGTATGAAGCCTATGCCCCAACTTCTGGCACCAATTTTGATGAATGCAGAGAGATAGTTCTTAAGGCTCTCAAAGTGAATGCGCCATGTCCCCATCCTAATTGCACTTTTGGTGGGATATGGAATGGTGGAGGGGGAAGTGGACAGAGACAGCTTGTTGGTATTGCTAGTCCAAATAAACCCAATTCCAAAATTCATATTGTGGATCTGAAGACTGGAGCTGAGCGAGCTTGTAAAACAAAATTTGTGGATGCTAAATCCACATATCCACTTTTGTTGGACTCTAGAATTCCATATGTATGCATGGATCTTACATACATGTACACCTTGTTAGTTGATGGATTTGGCCTAGATCCATGGCAAGAGGTTACATTGGCGGACAAAATTGAATATCAAGATGCTCTTGTAGATGCAGCGTGGCCTCTAGGCAATGCCATAGAAGCCATATCATCGTTGCCTAAATTTGAGCGATTAATGTATTTTATTTAA 1221 0.4242 MDFLTLITFLLILLMPTISSSQYLGNKLLFHRKILPNKQEDITSYAVIFDAGSTGSRVHVFHFDQNLDLLHIGEDVEFYDKIKPGLSAYADNPEEAAESLIPLLEKAESVVPVDMHPKTPLRLGATAGLRLLDGNASELILQAVRDMFSNRSTLNVQPDAVAIIDGTQEGSYLWVTINYLLGTLGKRFQKTVGVVDLGGGSVQMTYAVSRNTAKMLQKYQMERIHTQRGLCSRERNMTSMFTGVTYEAYAPTSGTNFDECREIVLKALKVNAPCPHPNCTFGGIWNGGGGSGQRQLVGIASPNKPNSKIHIVDLKTGAERACKTKFVDAKSTYPLLLDSRIPYVCMDLTYMYTLLVDGFGLDPWQEVTLADKIEYQDALVDAAWPLGNAIEAISSLPKFERLMYFI 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi39g00003 406 ProSitePatterns GDA1/CD39 family of nucleoside phosphatases signature. 164 179 IPR000407 GO:0016787
Sebi39g00003 406 CDD NBD_sugar-kinase_HSP70_actin 47 206 - -
Sebi39g00003 406 Pfam GDA1/CD39 (nucleoside phosphatase) family 235 398 IPR000407 GO:0016787
Sebi39g00003 406 Pfam GDA1/CD39 (nucleoside phosphatase) family 42 222 IPR000407 GO:0016787
Sebi39g00003 406 Gene3D Exopolyphosphatase. Domain 2 217 374 - -
Sebi39g00003 406 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 240 396 IPR000407 GO:0016787
Sebi39g00003 406 Gene3D - 42 186 - -
Sebi39g00003 406 FunFam Ectonucleoside triphosphate diphosphohydrolase 5 45 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi39g00003 Sebi-Chr39 70140 356818 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi39g00003 44 395 Calmodulin-binding Proteins AT3G04080 46.766 9.59e-112 334